Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J2887_RS17615 Genome accession   NZ_CP071785
Coordinates   3853841..3854446 (-) Length   201 a.a.
NCBI ID   WP_324197225.1    Uniprot ID   -
Organism   Marinobacter sp. CA1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3848841..3859446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2887_RS17600 (J2887_17545) - 3849633..3852041 (-) 2409 WP_227172445.1 TonB-dependent receptor -
  J2887_RS17605 (J2887_17550) - 3852124..3853071 (-) 948 WP_227172446.1 FecR domain-containing protein -
  J2887_RS17610 (J2887_17555) - 3853073..3853588 (-) 516 WP_227172447.1 sigma-70 family RNA polymerase sigma factor -
  J2887_RS17615 (J2887_17560) ssb 3853841..3854446 (-) 606 WP_324197225.1 single-stranded DNA-binding protein Machinery gene
  J2887_RS17620 (J2887_17565) - 3854519..3855886 (-) 1368 WP_227172448.1 MFS transporter -
  J2887_RS17625 (J2887_17570) uvrA 3856058..3858910 (+) 2853 WP_227172449.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22172.34 Da        Isoelectric Point: 6.0894

>NTDB_id=547768 J2887_RS17615 WP_324197225.1 3853841..3854446(-) (ssb) [Marinobacter sp. CA1]
MARGVNKVILIGNLGQDPETRYTPNGNAVVNLTLATDESYKDRQTGQLVPKTEWHRIVMFGKIAEVAGQYLRKGSKVYIE
GKLQTRKWQGQDGQDRYTTEIVVDINGQMQMLDSRGGDGGGMNQGAPAGRPQQQSYNQPAPQQQGGGYQGQSGGYSQQPP
QQQSQQHPPQPSPQHSPQHSPQQQQSSMPEPVDDFDDDIPF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=547768 J2887_RS17615 WP_324197225.1 3853841..3854446(-) (ssb) [Marinobacter sp. CA1]
ATGGCACGTGGTGTTAACAAGGTAATTCTCATCGGCAATCTGGGGCAGGACCCGGAAACCCGCTACACCCCGAACGGCAA
TGCCGTGGTCAACTTGACCCTGGCAACCGATGAAAGCTACAAGGATCGCCAGACCGGCCAGCTGGTGCCCAAGACCGAAT
GGCACCGCATCGTGATGTTCGGCAAGATTGCCGAAGTGGCCGGCCAGTACCTGCGCAAGGGCTCCAAGGTTTACATTGAA
GGCAAACTGCAGACCCGCAAGTGGCAGGGCCAGGATGGCCAGGACCGTTACACCACCGAGATCGTGGTGGACATCAACGG
CCAGATGCAGATGCTCGACAGCCGCGGCGGCGACGGTGGCGGCATGAACCAGGGCGCGCCGGCGGGTCGTCCGCAGCAGC
AGTCCTACAACCAGCCGGCACCGCAGCAGCAGGGTGGCGGTTACCAGGGGCAGTCTGGCGGTTACAGCCAGCAGCCACCG
CAACAGCAATCTCAGCAGCATCCTCCGCAACCGTCTCCGCAGCATTCTCCGCAGCATTCTCCACAACAACAGCAGAGCAG
CATGCCGGAGCCGGTGGACGATTTTGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.224

100

0.552
  ssb Glaesserella parasuis strain SC1401

53.731

100

0.537
  ssb Neisseria gonorrhoeae MS11

46.465

98.507

0.458
  ssb Neisseria meningitidis MC58

45.96

98.507

0.453