Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J3U92_RS15500 Genome accession   NZ_CP071773
Coordinates   3388980..3389504 (+) Length   174 a.a.
NCBI ID   WP_253343061.1    Uniprot ID   -
Organism   Proteus mirabilis strain swupm1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3383980..3394504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3U92_RS15495 (J3U92_15470) uvrA 3385893..3388727 (-) 2835 WP_004249165.1 excinuclease ABC subunit UvrA -
  J3U92_RS15500 (J3U92_15475) ssb 3388980..3389504 (+) 525 WP_253343061.1 single-stranded DNA-binding protein SSB1 Machinery gene
  J3U92_RS15505 (J3U92_15480) zur 3389845..3390375 (+) 531 WP_004245904.1 zinc uptake transcriptional repressor Zur -
  J3U92_RS15510 (J3U92_15485) lexA 3390556..3391167 (-) 612 WP_004245906.1 transcriptional repressor LexA -
  J3U92_RS15515 (J3U92_15490) - 3391295..3391666 (-) 372 WP_004245908.1 diacylglycerol kinase -
  J3U92_RS15520 (J3U92_15495) plsB 3391797..3394280 (+) 2484 WP_253343063.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18876.97 Da        Isoelectric Point: 4.9468

>NTDB_id=547705 J3U92_RS15500 WP_253343061.1 3388980..3389504(+) (ssb) [Proteus mirabilis strain swupm1]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAATLAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=547705 J3U92_RS15500 WP_253343061.1 3388980..3389504(+) (ssb) [Proteus mirabilis strain swupm1]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGTAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCGCCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGTGCACCATCTCGCCCAGCACAACAACCCGCAGCGACACTAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.892

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.522

100

0.598
  ssb Neisseria meningitidis MC58

47.458

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.483