Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   J0X00_RS17845 Genome accession   NZ_CP071708
Coordinates   2547289..2547873 (+) Length   194 a.a.
NCBI ID   WP_282477364.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2542289..2552873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS17825 (J0X00_17805) panP 2542620..2544263 (-) 1644 WP_282477362.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  J0X00_RS17830 (J0X00_17810) - 2544405..2544917 (-) 513 WP_136484137.1 hypothetical protein -
  J0X00_RS17835 (J0X00_17815) - 2545078..2545983 (-) 906 WP_282477363.1 lysine exporter LysO family protein -
  J0X00_RS17840 (J0X00_17820) - 2546005..2546925 (-) 921 WP_136484135.1 HDOD domain-containing protein -
  J0X00_RS17845 (J0X00_17825) tfoX 2547289..2547873 (+) 585 WP_282477364.1 TfoX/Sxy family DNA transformation protein Regulator
  J0X00_RS17850 (J0X00_17830) - 2547974..2548522 (-) 549 WP_136484133.1 hypothetical protein -
  J0X00_RS17855 (J0X00_17835) - 2548779..2549276 (-) 498 WP_136484132.1 response regulator -
  J0X00_RS17860 (J0X00_17840) - 2549404..2551323 (-) 1920 WP_282477365.1 ATP-binding protein -
  J0X00_RS17865 (J0X00_17845) - 2551541..2552809 (+) 1269 WP_282477366.1 DUF945 family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22420.00 Da        Isoelectric Point: 9.8041

>NTDB_id=547166 J0X00_RS17845 WP_282477364.1 2547289..2547873(+) (tfoX) [Vibrio sp. ABG19]
MSTNRYISFLNQFGPLEKRSMFGGTGLFRHHSMFALLAQGRLFIRGGCVLDDEFLALGCEKFRHIKKQTTATVNYYDVTD
LYRAEKACLDDLIHRSIEYAVASRCRQNLGNVKRLRDMPNMHFRLERMVKKAGIKDVATFVDLGAPKVFNKVRDIYGNDL
DVSLLWKFAGAIEGVHWELLQEPRKRQLLDSCRQ

Nucleotide


Download         Length: 585 bp        

>NTDB_id=547166 J0X00_RS17845 WP_282477364.1 2547289..2547873(+) (tfoX) [Vibrio sp. ABG19]
ATGAGTACAAACAGATACATCTCATTCCTCAATCAATTTGGTCCGTTGGAGAAGCGTTCCATGTTCGGTGGTACAGGATT
GTTCCGGCATCACTCTATGTTTGCATTATTGGCACAAGGGCGCTTGTTTATTCGTGGCGGCTGTGTGTTGGATGATGAGT
TTCTGGCTTTAGGATGTGAAAAATTCCGTCATATAAAAAAGCAGACCACGGCGACAGTTAATTATTATGACGTGACGGAT
TTATACCGTGCTGAGAAGGCTTGCCTTGACGATTTGATCCATCGTTCGATTGAGTATGCAGTGGCATCGCGCTGTCGCCA
GAACCTGGGTAACGTGAAGCGTTTAAGAGATATGCCGAATATGCATTTCAGACTGGAGCGCATGGTAAAAAAAGCGGGCA
TCAAGGACGTGGCGACTTTCGTTGATCTGGGAGCGCCAAAGGTCTTTAATAAAGTCCGCGATATTTACGGCAATGATCTG
GATGTCAGTCTGCTGTGGAAGTTTGCCGGCGCTATCGAAGGAGTGCATTGGGAACTGCTCCAGGAACCGCGTAAACGCCA
GTTGCTCGACAGTTGTCGGCAGTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(10-99)

TfoX C-terminal domain (TfoX_C)

(113-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

61.856

100

0.619
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

61.856

100

0.619
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

61.856

100

0.619
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

61.856

100

0.619
  tfoX Vibrio cholerae strain A1552

61.856

100

0.619
  tfoX Vibrio parahaemolyticus RIMD 2210633

57.513

99.485

0.572
  tfoX Vibrio campbellii strain DS40M4

55.44

99.485

0.552
  tfoX Aliivibrio fischeri ES114

51.064

96.907

0.495