Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BV82_RS24040 Genome accession   NZ_CP071706
Coordinates   5178712..5179224 (-) Length   170 a.a.
NCBI ID   WP_010220326.1    Uniprot ID   A0AAP0XEH4
Organism   Pseudomonas donghuensis strain P482     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5173712..5184224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV82_RS24025 (BV82_2002) - 5173967..5175355 (-) 1389 WP_026001145.1 TolC family outer membrane protein -
  BV82_RS24030 (BV82_2001) - 5175358..5176671 (-) 1314 WP_036995096.1 HlyD family type I secretion periplasmic adaptor subunit -
  BV82_RS24035 (BV82_2000) - 5176652..5178442 (-) 1791 WP_026001144.1 type I secretion system permease/ATPase -
  BV82_RS24040 (BV82_1999) ssb 5178712..5179224 (-) 513 WP_010220326.1 single-stranded DNA-binding protein Machinery gene
  BV82_RS24045 (BV82_1998) - 5179234..5180628 (-) 1395 WP_010220325.1 MFS transporter -
  BV82_RS24050 (BV82_1997) uvrA 5180758..5183592 (+) 2835 WP_010220324.1 excinuclease ABC subunit UvrA -
  BV82_RS24055 (BV82_1996) bfr 5183655..5184119 (-) 465 WP_010220323.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18954.09 Da        Isoelectric Point: 5.9314

>NTDB_id=547127 BV82_RS24040 WP_010220326.1 5178712..5179224(-) (ssb) [Pseudomonas donghuensis strain P482]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQDGAPQGGNNYNQAPRQQAPRPQQSAPQQRPAPQQAAPQPAPD
FDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=547127 BV82_RS24040 WP_010220326.1 5178712..5179224(-) (ssb) [Pseudomonas donghuensis strain P482]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGCGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCGACCAGCGAGCAGTGGACTGACAAGCAGACCGGCCAGAAGGTCGAGCGTACCGAAT
GGCACCGCGTTTCGATGTTCGGCAAGGTTGCCGAGATCGCCGGTGAATACCTGCGCAAAGGCTCGCAGGTCTACATCGAG
GGCAAGCTGCAGACCCGTGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGCCGTCCACAGAACCAGGACGGCGCCCCGCAAGGCGGCAACAACTACAACCAGGCGCCACGCC
AGCAGGCTCCGCGTCCACAGCAGTCCGCGCCACAACAGCGCCCGGCACCTCAGCAGGCCGCACCGCAGCCGGCTCCGGAC
TTCGACAGCTTCGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.333

100

0.618
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.529
  ssb Neisseria meningitidis MC58

49.718

100

0.518
  ssb Neisseria gonorrhoeae MS11

49.718

100

0.518