Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JZI28_RS08085 Genome accession   NZ_CP071700
Coordinates   1726660..1727184 (-) Length   174 a.a.
NCBI ID   WP_297341527.1    Uniprot ID   -
Organism   Pseudophaeobacter sp. TrK17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1708581..1732188 1726660..1727184 within 0
IS/Tn 1724318..1725664 1726660..1727184 flank 996


Gene organization within MGE regions


Location: 1708581..1732188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZI28_RS07970 - 1708581..1709918 (+) 1338 WP_375699786.1 tyrosine-type recombinase/integrase -
  JZI28_RS07975 - 1709969..1710424 (+) 456 WP_375699787.1 Bro-N domain-containing protein -
  JZI28_RS07980 - 1710552..1711313 (+) 762 WP_375699788.1 BRO family protein -
  JZI28_RS07985 - 1711319..1711795 (+) 477 WP_375699789.1 hypothetical protein -
  JZI28_RS07990 - 1712008..1712946 (+) 939 WP_375699790.1 hypothetical protein -
  JZI28_RS07995 - 1712939..1713175 (+) 237 WP_168621273.1 hypothetical protein -
  JZI28_RS08000 - 1713504..1714166 (+) 663 WP_375699791.1 recombinase family protein -
  JZI28_RS08005 - 1714244..1714855 (-) 612 WP_375699792.1 lysozyme inhibitor LprI family protein -
  JZI28_RS08010 - 1715597..1716759 (+) 1163 WP_375699793.1 IS3 family transposase -
  JZI28_RS08015 - 1716846..1717037 (+) 192 WP_375699794.1 hypothetical protein -
  JZI28_RS08020 - 1717168..1718553 (+) 1386 WP_375699795.1 IS1182 family transposase -
  JZI28_RS08025 - 1718715..1719230 (-) 516 WP_375699796.1 hypothetical protein -
  JZI28_RS08030 - 1719308..1719694 (-) 387 WP_375699797.1 PAN domain-containing protein -
  JZI28_RS08035 - 1719788..1720129 (-) 342 WP_375699798.1 hypothetical protein -
  JZI28_RS08040 - 1720585..1721991 (+) 1407 WP_375699799.1 hybrid sensor histidine kinase/response regulator -
  JZI28_RS08045 - 1721988..1722605 (-) 618 WP_375699800.1 response regulator -
  JZI28_RS08050 - 1722812..1723039 (+) 228 WP_375699523.1 hypothetical protein -
  JZI28_RS08055 - 1723114..1723539 (-) 426 WP_375699524.1 hypothetical protein -
  JZI28_RS08060 - 1723667..1723843 (-) 177 WP_375700139.1 hypothetical protein -
  JZI28_RS08065 - 1723926..1724099 (-) 174 Protein_1570 IS3 family transposase -
  JZI28_RS08070 - 1724166..1724306 (+) 141 WP_158441640.1 hypothetical protein -
  JZI28_RS08075 - 1724318..1725664 (-) 1347 WP_040176196.1 IS1380 family transposase -
  JZI28_RS08080 - 1725915..1726481 (-) 567 Protein_1573 IS30 family transposase -
  JZI28_RS08085 ssb 1726660..1727184 (-) 525 WP_297341527.1 single-stranded DNA-binding protein Machinery gene
  JZI28_RS08090 - 1727477..1728070 (+) 594 WP_295455565.1 lytic transglycosylase domain-containing protein -
  JZI28_RS08095 - 1728330..1728707 (+) 378 WP_295455566.1 hypothetical protein -
  JZI28_RS08100 - 1728861..1730045 (+) 1185 WP_375699801.1 cytochrome-c peroxidase -
  JZI28_RS08105 - 1730098..1732185 (-) 2088 WP_375699802.1 dipeptide ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18293.80 Da        Isoelectric Point: 5.2733

>NTDB_id=547103 JZI28_RS08085 WP_297341527.1 1726660..1727184(-) (ssb) [Pseudophaeobacter sp. TrK17]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSENWKDRNTGERRERTEWHSVAIFNEGLVRVAEQYLRKGSKVYI
EGQLQTRKWQDQSGNDRYSTEVVLQGFGSTLTMLDGRGEGGGAGGGGGGNYGGGQDSGYGGGGGGYDSGAQQGGGFGGGN
SGPSHNIDDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=547103 JZI28_RS08085 WP_297341527.1 1726660..1727184(-) (ssb) [Pseudophaeobacter sp. TrK17]
ATGGCCGGCTCAGTCAACAAAGTCATTCTCATCGGCAACCTGGGGCGTGACCCGGAAGTACGGTCATTTCAGAACGGTGG
CAAAGTTTGCAATCTGCGCATTGCAACCTCGGAAAACTGGAAAGACCGCAACACTGGCGAACGCCGCGAGCGTACCGAAT
GGCATTCGGTAGCGATCTTCAACGAAGGTCTTGTCCGTGTCGCTGAGCAATACCTGCGCAAAGGCTCCAAAGTCTACATT
GAAGGTCAGCTACAGACCCGCAAATGGCAGGATCAAAGCGGCAATGACCGCTACTCCACCGAAGTGGTTCTGCAGGGGTT
TGGCTCGACGCTGACCATGCTCGATGGTCGTGGCGAAGGCGGTGGCGCAGGCGGCGGTGGCGGCGGCAACTACGGTGGCG
GCCAGGACAGCGGCTATGGCGGTGGCGGCGGCGGTTACGACAGCGGCGCGCAACAGGGCGGCGGCTTTGGTGGCGGCAAC
AGCGGCCCCTCGCACAACATTGACGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.286

100

0.546
  ssb Glaesserella parasuis strain SC1401

50

100

0.546
  ssb Neisseria gonorrhoeae MS11

41.885

100

0.46
  ssb Neisseria meningitidis MC58

41.361

100

0.454