Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   J1N58_RS08825 Genome accession   NZ_CP071697
Coordinates   1854058..1854702 (+) Length   214 a.a.
NCBI ID   WP_105101087.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1849058..1859702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS08800 (J1N58_08800) - 1849716..1851053 (-) 1338 WP_002942867.1 hemolysin family protein -
  J1N58_RS08805 (J1N58_08805) - 1851186..1851965 (+) 780 WP_207560285.1 ABC transporter ATP-binding protein -
  J1N58_RS08810 (J1N58_08810) - 1851983..1852537 (-) 555 WP_207560286.1 class I SAM-dependent methyltransferase -
  J1N58_RS08815 (J1N58_08815) - 1852547..1853065 (-) 519 WP_207560287.1 TetR/AcrR family transcriptional regulator -
  J1N58_RS08820 (J1N58_08820) - 1853187..1854005 (+) 819 WP_207560288.1 cation diffusion facilitator family transporter -
  J1N58_RS08825 (J1N58_08825) cclA/cilC 1854058..1854702 (+) 645 WP_105101087.1 A24 family peptidase Machinery gene
  J1N58_RS08830 (J1N58_08830) - 1854810..1856270 (+) 1461 WP_207560289.1 nicotinate phosphoribosyltransferase -
  J1N58_RS08835 (J1N58_08835) nadE 1856283..1857107 (+) 825 WP_023371230.1 ammonia-dependent NAD(+) synthetase -
  J1N58_RS08840 (J1N58_08840) trpB 1857148..1858323 (-) 1176 WP_172064275.1 tryptophan synthase subunit beta -
  J1N58_RS08845 (J1N58_08845) - 1858844..1859365 (-) 522 WP_192369036.1 VanZ family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24376.37 Da        Isoelectric Point: 8.7013

>NTDB_id=547061 J1N58_RS08825 WP_105101087.1 1854058..1854702(+) (cclA/cilC) [Streptococcus suis strain 1112S]
MKTIILFFLGASIGSFLGLVIDRFPEQSIITPSSHCNACKRRLKAWDLIPVLSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFVALILSQLNWLFCGFLLLAYLTEKWQVNIGSGDFL
YLASLSLLFGFTEILWIIQLSSIFGLAIFFIFKPKSLPYVPFLFLASLVINITL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=547061 J1N58_RS08825 WP_105101087.1 1854058..1854702(+) (cclA/cilC) [Streptococcus suis strain 1112S]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCACCCCCTCTAGTCACTGCAATGCCTGCAAACGACGGCTCAAGGCCTGGGACTTAATTCCAGTCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTAGAATTCTTAGCTGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTGTCTGGCTTGTTTTTACTTTTGTTGCCTTGATACTCTCCCAGCTTA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTAACTGAAAAATGGCAAGTCAATATTGGTTCTGGCGACTTTCTC
TATCTAGCAAGTCTGTCTCTTTTGTTTGGCTTTACAGAAATTCTTTGGATTATTCAGCTTAGTTCCATCTTTGGACTGGC
AATCTTTTTTATCTTTAAACCAAAATCCCTCCCTTATGTTCCTTTTCTATTTTTAGCCAGTCTAGTCATCAATATCACTC
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.289

98.598

0.486
  cclA/cilC Streptococcus pneumoniae Rx1

48.78

95.794

0.467
  cclA/cilC Streptococcus pneumoniae D39

48.78

95.794

0.467
  cclA/cilC Streptococcus pneumoniae R6

48.78

95.794

0.467
  cclA/cilC Streptococcus mitis NCTC 12261

46.445

98.598

0.458
  cclA/cilC Streptococcus pneumoniae TIGR4

47.317

95.794

0.453