Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   J1N58_RS07860 Genome accession   NZ_CP071697
Coordinates   1681929..1683278 (-) Length   449 a.a.
NCBI ID   WP_029176482.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1676929..1688278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS07845 (J1N58_07845) pbp2b 1677039..1679111 (-) 2073 WP_105158081.1 penicillin-binding protein PBP2B -
  J1N58_RS07850 (J1N58_07850) vga(F) 1679203..1680588 (-) 1386 WP_207560251.1 ABC-F type ribosomal protection protein Vga(F) -
  J1N58_RS07855 (J1N58_07855) vicX 1681119..1681922 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  J1N58_RS07860 (J1N58_07860) micB 1681929..1683278 (-) 1350 WP_029176482.1 cell wall metabolism sensor histidine kinase VicK Regulator
  J1N58_RS07865 (J1N58_07865) micA 1683271..1683975 (-) 705 WP_004298854.1 response regulator YycF Regulator
  J1N58_RS07870 (J1N58_07870) - 1684169..1684930 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  J1N58_RS07875 (J1N58_07875) - 1684941..1685780 (+) 840 WP_099872401.1 transporter substrate-binding domain-containing protein -
  J1N58_RS07880 (J1N58_07880) - 1685795..1686493 (+) 699 WP_004298848.1 amino acid ABC transporter permease -
  J1N58_RS07885 (J1N58_07885) - 1686508..1687167 (+) 660 WP_099872398.1 amino acid ABC transporter permease -
  J1N58_RS11945 (J1N58_07890) - 1687290..1687565 (+) 276 WP_061844941.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51031.10 Da        Isoelectric Point: 4.5202

>NTDB_id=547056 J1N58_RS07860 WP_029176482.1 1681929..1683278(-) (micB) [Streptococcus suis strain 1112S]
MINQLRYLMTTAEFWFVVILIGFLIALTVLLIENYRDNKQIKQLNQKVNALIEGNYADVLDMRGSPEITDMANSLNDLSE
VIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIGRIIMINDMAQKQLGLSNPKQEQYHLLEVLDLSDRYTLRDLLAQTPE
IVIDHPNENEEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALT
ESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNADSDKVYTIVRDYQISPIW
VEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKADLPRIFDRFYRVDKARSRAQGGTGLG
LAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWDDSDEEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=547056 J1N58_RS07860 WP_029176482.1 1681929..1683278(-) (micB) [Streptococcus suis strain 1112S]
ATGATTAATCAATTACGTTATTTAATGACCACAGCAGAATTTTGGTTTGTTGTCATTTTGATTGGTTTTCTAATTGCTCT
GACGGTCCTTTTGATTGAAAACTATCGGGATAATAAGCAAATTAAACAACTCAATCAAAAAGTCAATGCCTTAATTGAGG
GGAATTATGCAGATGTGTTAGACATGAGGGGAAGTCCTGAAATCACAGATATGGCGAATTCTCTTAATGATCTGTCCGAG
GTCATCCGCTTAACTCATGATAATTTAGAACAAGAAAAGACGCGTCTGACGTCCATCCTGTCCTATATGAGTGATGGTGT
TATTGCTACAGACCGTATCGGACGGATCATCATGATTAACGATATGGCCCAGAAACAGTTGGGATTATCTAACCCAAAGC
AGGAGCAGTATCACCTGCTCGAGGTTTTAGATTTATCAGACCGTTATACATTGAGAGATTTGTTGGCTCAGACACCTGAG
ATTGTGATTGATCACCCCAATGAAAACGAAGAATTTCTGACTTTACGCGCTAATTTTGCCACGATTCGTAGTGAGAGTGG
TCTGATTTCTGGCTTGGTTGTCGTCTTACATGATATGACCGAGCAGGCCAAGGAAGAACGGGAACGTAGGCTGTTTGTGT
CAAATGTGAGTCATGAATTGCGTACGCCATTGACTTCCGTCAAATCCTATCTAGAGGCTCTGGATGAGGGAGCGCTAACG
GAGTCTGTTGCACCGAGTTTTGTTAAGGTATCCTTAGATGAGACCAACCGCATGATGCGGATGATTACAGACCTCCTAAG
TTTATCGCGCATTGATAATCAGGTTGGTCAGATAGATGTCGAACTGATAAACTTTACTGCTTTTGTGACCTTTATTCTTA
ACCGTTTTGACCAAATGAAAAATGCTGATTCTGATAAGGTCTATACGATTGTTCGTGACTATCAAATCAGTCCTATTTGG
GTTGAGATTGATACAGATAAGATGACTCAGGTTTTGGATAATATCTTAAATAATGCCATTAAATATTCGCCAGACGGCGG
GACAATTACCTTCAGCATGAAGACCACAGATAGTCAGTTGATTGTATCCGTCTCAGACGAAGGTCTGGGGATTCCGAAAG
CAGATTTACCTAGAATTTTTGATCGATTCTATCGCGTGGACAAGGCACGATCTCGTGCTCAAGGCGGTACAGGTCTTGGT
TTAGCTATTGCAAAAGAGATCGTAAAACAACATAAGGGCTTTATCTGGGCTAAAAGCGAATATGGTCATGGCTCAACGTT
TACAATTGTCTTGCCGTACAGCAAGGACATCGCACTGGATGAGTGGGATGATTCAGATGAGGAAGAATAG

Domains

Predicted by InterproScan.

PAS fold (PAS)

(96-199)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

70.183

97.105

0.682
  vicK Streptococcus mutans UA159

70.72

89.755

0.635