Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   J1N58_RS07855 Genome accession   NZ_CP071697
Coordinates   1681119..1681922 (-) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1676119..1686922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS07840 (J1N58_07840) recR 1676434..1677030 (-) 597 WP_024386938.1 recombination mediator RecR -
  J1N58_RS07845 (J1N58_07845) pbp2b 1677039..1679111 (-) 2073 WP_105158081.1 penicillin-binding protein PBP2B -
  J1N58_RS07850 (J1N58_07850) vga(F) 1679203..1680588 (-) 1386 WP_207560251.1 ABC-F type ribosomal protection protein Vga(F) -
  J1N58_RS07855 (J1N58_07855) vicX 1681119..1681922 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  J1N58_RS07860 (J1N58_07860) micB 1681929..1683278 (-) 1350 WP_029176482.1 cell wall metabolism sensor histidine kinase VicK Regulator
  J1N58_RS07865 (J1N58_07865) micA 1683271..1683975 (-) 705 WP_004298854.1 response regulator YycF Regulator
  J1N58_RS07870 (J1N58_07870) - 1684169..1684930 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  J1N58_RS07875 (J1N58_07875) - 1684941..1685780 (+) 840 WP_099872401.1 transporter substrate-binding domain-containing protein -
  J1N58_RS07880 (J1N58_07880) - 1685795..1686493 (+) 699 WP_004298848.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=547055 J1N58_RS07855 WP_002935843.1 1681119..1681922(-) (vicX) [Streptococcus suis strain 1112S]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=547055 J1N58_RS07855 WP_002935843.1 1681119..1681922(-) (vicX) [Streptococcus suis strain 1112S]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGACGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCCCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGACACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772