Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   J1N58_RS07440 Genome accession   NZ_CP071697
Coordinates   1581031..1581972 (-) Length   313 a.a.
NCBI ID   WP_024378428.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1576031..1586972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS07415 (J1N58_07415) prsA 1576139..1577140 (-) 1002 WP_207560231.1 peptidylprolyl isomerase PrsA -
  J1N58_RS07420 (J1N58_07420) - 1577202..1577921 (-) 720 WP_099871916.1 O-methyltransferase -
  J1N58_RS07425 (J1N58_07425) - 1577996..1578544 (-) 549 WP_099871888.1 DUF6630 family protein -
  J1N58_RS07430 (J1N58_07430) - 1578555..1578998 (-) 444 WP_099871890.1 hypothetical protein -
  J1N58_RS07435 (J1N58_07435) pepF 1579000..1580802 (-) 1803 WP_105131092.1 oligoendopeptidase F Regulator
  J1N58_RS07440 (J1N58_07440) coiA 1581031..1581972 (-) 942 WP_024378428.1 competence protein CoiA family protein Machinery gene
  J1N58_RS07445 (J1N58_07445) - 1582034..1582600 (+) 567 WP_207560232.1 GNAT family protein -
  J1N58_RS07450 (J1N58_07450) metG 1582631..1584634 (-) 2004 WP_207560233.1 methionine--tRNA ligase -
  J1N58_RS07455 (J1N58_07455) - 1584843..1585592 (-) 750 WP_207560234.1 hypothetical protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36121.90 Da        Isoelectric Point: 8.7051

>NTDB_id=547052 J1N58_RS07440 WP_024378428.1 1581031..1581972(-) (coiA) [Streptococcus suis strain 1112S]
MLVALDEDGQVFNVLENPAPQGSFTCPVCGGLVRYKSGKVMRSHFAHVSLRDCSYFSENESAQHLSLKSSLYNWLAKNEL
VELEKCLPKIGQVADLLVNNSLALEVQCSSLPITRLQARTIAYHVAGYQVVWLLGKDLWLKGRLTNLHKQFLSFSMNMGF
HLWELDDEKNELRLRYLIHEDLRGKVHCLTKVFPFGQGNLLDILRLPFAKQALSYFTCSVDQDLLDYVAKQLYYRVPKWM
SLQAEAYQQGKNLLSQSLDDFYPQIRLPRSAIGFAQIKQDLTPIYQAFDLFYDKAKDKRKQILYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=547052 J1N58_RS07440 WP_024378428.1 1581031..1581972(-) (coiA) [Streptococcus suis strain 1112S]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGCAGTTTTACTTGTCC
AGTTTGTGGAGGCCTGGTCCGATACAAGTCCGGAAAGGTTATGCGTTCGCACTTTGCCCATGTTTCCCTGCGGGATTGTA
GTTACTTCTCCGAGAATGAGTCCGCCCAGCACCTGTCACTTAAGTCCAGTCTCTATAACTGGTTGGCTAAAAACGAACTG
GTTGAACTTGAAAAATGCCTGCCAAAGATTGGCCAGGTCGCTGATTTATTGGTCAATAATAGTCTGGCCTTGGAAGTTCA
ATGTTCTAGCCTCCCCATTACTCGTTTGCAGGCGAGAACAATAGCCTATCATGTTGCAGGTTATCAGGTTGTTTGGTTGC
TTGGCAAGGATTTGTGGCTCAAGGGACGACTGACCAATTTGCACAAGCAATTTCTCTCCTTTAGTATGAACATGGGTTTT
CATCTGTGGGAGTTAGATGATGAGAAGAATGAGTTAAGACTTCGTTACCTCATTCATGAAGACTTGCGGGGCAAGGTTCA
TTGTCTGACCAAGGTTTTTCCTTTTGGTCAAGGGAATTTACTAGATATTTTACGGCTTCCCTTTGCCAAGCAAGCCTTGT
CCTATTTTACTTGTTCGGTTGATCAGGATTTGCTGGACTATGTTGCCAAGCAACTCTATTACCGAGTACCCAAGTGGATG
AGCTTGCAGGCGGAGGCCTACCAGCAAGGGAAAAACTTGCTCAGTCAGTCCTTGGATGACTTCTATCCCCAAATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATCAAACAAGACCTGACACCGATTTACCAAGCATTTGATCTGTTTTACGACA
AAGCAAAAGATAAGAGAAAACAAATCTTGTATCCACCTATCATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

52.244

99.681

0.521
  coiA Streptococcus pneumoniae Rx1

52.244

99.681

0.521
  coiA Streptococcus pneumoniae D39

52.244

99.681

0.521
  coiA Streptococcus pneumoniae R6

52.244

99.681

0.521
  coiA Streptococcus mitis NCTC 12261

52.244

99.681

0.521
  coiA Lactococcus lactis subsp. cremoris KW2

40.938

100

0.419