Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J3P73_RS12225 Genome accession   NZ_CP071678
Coordinates   2455201..2455710 (+) Length   169 a.a.
NCBI ID   WP_075223847.1    Uniprot ID   -
Organism   Rhizobium ruizarguesonis strain NZLR24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2450201..2460710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3P73_RS12210 (J3P73_12210) - 2450708..2451514 (-) 807 WP_075223977.1 DUF72 domain-containing protein -
  J3P73_RS12215 (J3P73_12215) - 2451538..2451999 (-) 462 WP_075223848.1 GNAT family N-acetyltransferase -
  J3P73_RS12220 (J3P73_12220) uvrA 2451996..2454917 (-) 2922 WP_018494639.1 excinuclease ABC subunit UvrA -
  J3P73_RS12225 (J3P73_12225) ssb 2455201..2455710 (+) 510 WP_075223847.1 single-stranded DNA-binding protein Machinery gene
  J3P73_RS12230 (J3P73_12230) - 2455838..2456485 (-) 648 WP_018069570.1 MarC family protein -
  J3P73_RS12235 (J3P73_12235) gyrA 2456723..2459578 (+) 2856 WP_130691069.1 DNA gyrase subunit A -
  J3P73_RS38075 - 2459767..2459901 (-) 135 WP_269207301.1 hypothetical protein -
  J3P73_RS12240 (J3P73_12240) - 2459938..2460093 (-) 156 WP_003539654.1 hypothetical protein -
  J3P73_RS12245 (J3P73_12245) - 2460217..2460498 (-) 282 WP_130691761.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18080.82 Da        Isoelectric Point: 5.3175

>NTDB_id=546927 J3P73_RS12225 WP_075223847.1 2455201..2455710(+) (ssb) [Rhizobium ruizarguesonis strain NZLR24]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASGGRGSAGGGNDYGDDYGAPAPSSAPSRGGGGGGNFS
RDLDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=546927 J3P73_RS12225 WP_075223847.1 2455201..2455710(+) (ssb) [Rhizobium ruizarguesonis strain NZLR24]
ATGGCTGGTAGCGTGAACAAGGTAATTCTGATTGGAAACGTCGGTGCAGACCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACCTGGCGCGACCGCAATTCCGGCGAGCGCCGTGAGAAGACCGAAT
GGCACACTGTCGTCGTCTTCAACGAGGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTTTATATC
GAAGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGCAGGGCCAGGACCGTTACAGCACGGAAGTGGTGCTGCAGGGTTT
TGGTTCGACGCTGACGATGCTCGACGGCCGCGGCGAAGGCGGCGGTGCGAGCGGCGGCCGTGGCAGCGCCGGTGGCGGCA
ACGATTATGGCGACGACTACGGCGCCCCGGCTCCCTCCTCAGCACCGAGCCGCGGCGGTGGCGGTGGCGGCAACTTCTCG
CGGGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.867

100

0.521
  ssb Glaesserella parasuis strain SC1401

43.455

100

0.491
  ssb Neisseria meningitidis MC58

39.011

100

0.42
  ssb Neisseria gonorrhoeae MS11

39.106

100

0.414