Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J3O30_RS11425 Genome accession   NZ_CP071632
Coordinates   2283101..2283613 (+) Length   170 a.a.
NCBI ID   WP_207584229.1    Uniprot ID   -
Organism   Rhizobium sp. NZLR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2278101..2288613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3O30_RS11410 (J3O30_11410) - 2278608..2279414 (-) 807 WP_207584226.1 DUF72 domain-containing protein -
  J3O30_RS11415 (J3O30_11415) - 2279439..2279900 (-) 462 WP_207584227.1 GNAT family N-acetyltransferase -
  J3O30_RS11420 (J3O30_11420) uvrA 2279897..2282818 (-) 2922 WP_207584228.1 excinuclease ABC subunit UvrA -
  J3O30_RS11425 (J3O30_11425) ssb 2283101..2283613 (+) 513 WP_207584229.1 single-stranded DNA-binding protein Machinery gene
  J3O30_RS11430 (J3O30_11430) - 2283705..2284352 (-) 648 WP_207584230.1 MarC family protein -
  J3O30_RS11435 (J3O30_11435) gyrA 2284601..2287420 (+) 2820 WP_207584231.1 DNA gyrase subunit A -
  J3O30_RS11440 (J3O30_11440) - 2287760..2287915 (-) 156 WP_003586478.1 hypothetical protein -
  J3O30_RS11445 (J3O30_11445) - 2288046..2288334 (-) 289 Protein_2264 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18229.92 Da        Isoelectric Point: 5.3175

>NTDB_id=546920 J3O30_RS11425 WP_207584229.1 2283101..2283613(+) (ssb) [Rhizobium sp. NZLR1]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASSGGGRGGSSSNDYGDDYGAPAPSSSPSRGGGGGGNF
SRDLDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=546920 J3O30_RS11425 WP_207584229.1 2283101..2283613(+) (ssb) [Rhizobium sp. NZLR1]
ATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGAAATGTCGGTGCGGACCCGGAAATCCGCCGCACCCAGGATGGCCG
GCCGATCGCCAATCTTCGTATTGCGACCTCGGAGACCTGGCGCGACCGCAATTCCGGCGAGCGTCGTGAAAAGACCGAAT
GGCACACTGTCGTCGTCTTCAACGAGGGCCTGTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGTTGCAGACCCGTAAGTGGCAGGACCAGCAGGGACAGGACCGCTACTCGACGGAAGTGGTGCTGCAGGGCTT
CGGTTCGACGCTGACCATGCTCGACGGCCGCGGTGAAGGCGGCGGTGCAAGCTCCGGTGGCGGCCGTGGCGGCAGCAGCA
GCAATGATTATGGCGACGACTACGGCGCCCCGGCTCCCTCATCATCGCCAAGCCGCGGCGGTGGCGGCGGTGGCAACTTC
TCGCGGGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.851

100

0.5
  ssb Glaesserella parasuis strain SC1401

42.857

100

0.476
  ssb Neisseria meningitidis MC58

39.13

100

0.424
  ssb Neisseria gonorrhoeae MS11

37.43

100

0.394