Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J3P71_RS12420 Genome accession   NZ_CP071626
Coordinates   2465076..2465585 (+) Length   169 a.a.
NCBI ID   WP_020049916.1    Uniprot ID   A0AB35FC39
Organism   Rhizobium leguminosarum strain GLR17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2460076..2470585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3P71_RS12405 (J3P71_12405) - 2460582..2461388 (-) 807 WP_168303014.1 DUF72 domain-containing protein -
  J3P71_RS12410 (J3P71_12410) - 2461413..2461874 (-) 462 WP_168303015.1 GNAT family N-acetyltransferase -
  J3P71_RS12415 (J3P71_12415) uvrA 2461871..2464792 (-) 2922 WP_168303016.1 excinuclease ABC subunit UvrA -
  J3P71_RS12420 (J3P71_12420) ssb 2465076..2465585 (+) 510 WP_020049916.1 single-stranded DNA-binding protein Machinery gene
  J3P71_RS12425 (J3P71_12425) - 2465704..2466351 (-) 648 WP_168303017.1 MarC family protein -
  J3P71_RS12430 (J3P71_12430) gyrA 2466588..2469425 (+) 2838 WP_168303018.1 DNA gyrase subunit A -
  J3P71_RS36750 - 2469608..2469742 (-) 135 WP_261317824.1 hypothetical protein -
  J3P71_RS12435 (J3P71_12435) - 2469779..2469934 (-) 156 WP_003539654.1 hypothetical protein -
  J3P71_RS36880 (J3P71_12440) - 2470069..2470347 (-) 279 WP_168303019.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18080.82 Da        Isoelectric Point: 5.3175

>NTDB_id=546914 J3P71_RS12420 WP_020049916.1 2465076..2465585(+) (ssb) [Rhizobium leguminosarum strain GLR17]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANIRLATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASGGRGSAGGGNDYGDDYGAPAPASSPSRGGGGGGNFS
RDLDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=546914 J3P71_RS12420 WP_020049916.1 2465076..2465585(+) (ssb) [Rhizobium leguminosarum strain GLR17]
ATGGCTGGTAGTGTGAATAAGGTAATTCTGATTGGAAACGTCGGTGCAGATCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATATCCGTCTTGCAACCTCGGAGACCTGGCGCGACCGCAATTCCGGCGAGCGCCGCGAAAAGACCGAAT
GGCACACGGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAAGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGCAGGGCCAGGATCGCTACAGCACGGAAGTGGTGCTGCAGGGTTT
CGGTTCGACGCTGACGATGCTCGACGGCCGCGGTGAAGGCGGCGGCGCGAGCGGCGGCCGTGGCAGTGCCGGTGGCGGCA
ACGATTATGGCGACGATTACGGCGCCCCGGCTCCCGCTTCATCGCCGAGCCGCGGCGGTGGCGGCGGCGGCAACTTCTCG
CGGGATCTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.289

100

0.515
  ssb Glaesserella parasuis strain SC1401

43.455

100

0.491
  ssb Neisseria meningitidis MC58

39.011

100

0.42
  ssb Neisseria gonorrhoeae MS11

38.547

100

0.408