Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J2J97_RS10620 Genome accession   NZ_CP071618
Coordinates   2194247..2194759 (+) Length   170 a.a.
NCBI ID   WP_064708929.1    Uniprot ID   A0A5R9NPC7
Organism   Rhizobium bangladeshense strain PLR8-1a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2189247..2199759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2J97_RS10605 (J2J97_10605) - 2189753..2190559 (-) 807 WP_207606921.1 DUF72 domain-containing protein -
  J2J97_RS10610 (J2J97_10610) - 2190583..2191044 (-) 462 WP_207606922.1 GNAT family N-acetyltransferase -
  J2J97_RS10615 (J2J97_10615) uvrA 2191041..2193962 (-) 2922 WP_064712796.1 excinuclease ABC subunit UvrA -
  J2J97_RS10620 (J2J97_10620) ssb 2194247..2194759 (+) 513 WP_064708929.1 single-stranded DNA-binding protein Machinery gene
  J2J97_RS10625 (J2J97_10625) - 2194881..2195528 (-) 648 WP_064708928.1 MarC family protein -
  J2J97_RS10630 (J2J97_10630) gyrA 2195767..2198574 (+) 2808 WP_064708927.1 DNA gyrase subunit A -
  J2J97_RS33175 - 2198756..2198890 (-) 135 WP_259663786.1 hypothetical protein -
  J2J97_RS10635 (J2J97_10635) - 2198926..2199081 (-) 156 WP_003539654.1 hypothetical protein -
  J2J97_RS10640 (J2J97_10640) - 2199214..2199505 (-) 292 Protein_2112 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18376.07 Da        Isoelectric Point: 5.3093

>NTDB_id=546907 J2J97_RS10620 WP_064708929.1 2194247..2194759(+) (ssb) [Rhizobium bangladeshense strain PLR8-1a]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFNSTLTMLDGRGDGGGASSGFGGGRGSSNNDYGDDYGAPSPSSAPSRGGGGGNF
SRDLDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=546907 J2J97_RS10620 WP_064708929.1 2194247..2194759(+) (ssb) [Rhizobium bangladeshense strain PLR8-1a]
ATGGCTGGTAGCGTGAACAAGGTAATTCTGGTTGGAAACGTGGGTGCAGACCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTCCGCATCGCGACTTCGGAGACCTGGCGTGACCGCAATTCCGGCGAACGCCGCGAAAAGACCGAGT
GGCACACCGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTTGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGTCAGCTGCAGACCCGTAAATGGCAGGACCAGCAGGGCCAGGATCGCTACTCGACGGAAGTGGTGCTGCAAGGCTT
CAATTCGACGCTGACGATGCTCGACGGCCGCGGCGATGGCGGCGGCGCAAGCTCCGGCTTCGGCGGCGGCCGCGGCAGCA
GCAATAACGATTACGGCGACGACTACGGCGCCCCGTCACCGTCCTCAGCGCCGAGCCGCGGCGGTGGCGGCGGCAACTTC
TCGCGCGATCTCGACGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5R9NPC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.263

100

0.506
  ssb Vibrio cholerae strain A1552

48.276

100

0.494
  ssb Neisseria meningitidis MC58

37.778

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.569

100

0.4