Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J2J98_RS10565 Genome accession   NZ_CP071612
Coordinates   2164717..2165229 (+) Length   170 a.a.
NCBI ID   WP_207603049.1    Uniprot ID   -
Organism   Rhizobium bangladeshense strain BLR175     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2159717..2170229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2J98_RS10550 (J2J98_10550) - 2160223..2161029 (-) 807 WP_207603046.1 DUF72 domain-containing protein -
  J2J98_RS10555 (J2J98_10555) - 2161053..2161514 (-) 462 WP_207603047.1 GNAT family N-acetyltransferase -
  J2J98_RS10560 (J2J98_10560) uvrA 2161511..2164432 (-) 2922 WP_207603048.1 excinuclease ABC subunit UvrA -
  J2J98_RS10565 (J2J98_10565) ssb 2164717..2165229 (+) 513 WP_207603049.1 single-stranded DNA-binding protein Machinery gene
  J2J98_RS10570 (J2J98_10570) - 2165351..2165998 (-) 648 WP_064708928.1 MarC family protein -
  J2J98_RS10575 (J2J98_10575) gyrA 2166237..2169044 (+) 2808 WP_064708927.1 DNA gyrase subunit A -
  J2J98_RS30675 - 2169226..2169360 (-) 135 WP_259663786.1 hypothetical protein -
  J2J98_RS10580 (J2J98_10580) - 2169396..2169551 (-) 156 WP_003539654.1 hypothetical protein -
  J2J98_RS10585 (J2J98_10585) - 2169684..2169975 (-) 292 Protein_2093 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18392.11 Da        Isoelectric Point: 5.3093

>NTDB_id=546899 J2J98_RS10565 WP_207603049.1 2164717..2165229(+) (ssb) [Rhizobium bangladeshense strain BLR175]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFNSTLTMLDGRGDGGGASSGFGGGRGSSNNDYGDDYGAPSLSSAPSRGGGGGNF
SRDLDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=546899 J2J98_RS10565 WP_207603049.1 2164717..2165229(+) (ssb) [Rhizobium bangladeshense strain BLR175]
ATGGCTGGTAGCGTGAACAAGGTAATTCTGGTTGGAAACGTGGGTGCAGACCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTCCGCATCGCGACTTCGGAGACCTGGCGTGACCGCAATTCCGGCGAACGCCGCGAAAAGACCGAGT
GGCACACCGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTTGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGTCAGCTGCAGACCCGTAAATGGCAGGACCAGCAGGGCCAGGACCGCTACTCGACGGAAGTGGTGCTGCAGGGCTT
CAATTCGACGCTGACGATGCTCGACGGCCGCGGCGATGGCGGCGGCGCGAGCTCCGGCTTCGGCGGCGGCCGCGGCAGCA
GCAATAACGATTACGGCGACGACTACGGCGCCCCGTCACTGTCCTCAGCGCCGAGCCGCGGCGGTGGCGGCGGCAACTTC
TCGCGCGATCTCGACGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.213

100

0.5
  ssb Vibrio cholerae strain A1552

48.276

100

0.494
  ssb Neisseria meningitidis MC58

37.569

100

0.4
  ssb Neisseria gonorrhoeae MS11

36.667

100

0.388