Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J2J99_RS11085 Genome accession   NZ_CP071604
Coordinates   2258739..2259254 (+) Length   171 a.a.
NCBI ID   WP_168296891.1    Uniprot ID   -
Organism   Rhizobium binae strain BLR195     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2253739..2264254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2J99_RS11070 (J2J99_11070) - 2254442..2255248 (-) 807 WP_168296894.1 DUF72 domain-containing protein -
  J2J99_RS11075 (J2J99_11075) - 2255272..2255538 (-) 267 WP_168296893.1 hypothetical protein -
  J2J99_RS11080 (J2J99_11080) uvrA 2255535..2258456 (-) 2922 WP_168296892.1 excinuclease ABC subunit UvrA -
  J2J99_RS11085 (J2J99_11085) ssb 2258739..2259254 (+) 516 WP_168296891.1 single-stranded DNA-binding protein Machinery gene
  J2J99_RS11090 (J2J99_11090) - 2259357..2260004 (-) 648 WP_168296890.1 MarC family protein -
  J2J99_RS11095 (J2J99_11095) gyrA 2260242..2263040 (+) 2799 WP_168296889.1 DNA gyrase subunit A -
  J2J99_RS34475 - 2263188..2263322 (-) 135 WP_281410839.1 hypothetical protein -
  J2J99_RS11100 (J2J99_11100) - 2263359..2263514 (-) 156 WP_003539654.1 hypothetical protein -
  J2J99_RS11105 (J2J99_11105) - 2263657..2263935 (-) 279 WP_168296888.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18444.15 Da        Isoelectric Point: 5.3175

>NTDB_id=546891 J2J99_RS11085 WP_168296891.1 2258739..2259254(+) (ssb) [Rhizobium binae strain BLR195]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFNSTLTMLDGRGEGGGASPGFGGGRGGGSNNDYGDDYGAPAPSSSSNRGGGGGN
FSRDLDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=546891 J2J99_RS11085 WP_168296891.1 2258739..2259254(+) (ssb) [Rhizobium binae strain BLR195]
ATGGCTGGTAGCGTGAACAAGGTAATTCTGGTTGGAAACGTGGGTGCAGATCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTCCGTATCGCGACCTCGGAGACCTGGCGCGACCGCAATTCCGGCGAACGCCGCGAAAAGACCGAAT
GGCACACTGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTTGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGCAGGGCCAGGACCGTTATTCGACGGAAGTGGTGCTGCAGGGCTT
TAATTCGACGCTGACCATGCTTGATGGACGCGGCGAGGGCGGCGGTGCGAGCCCCGGCTTCGGCGGCGGCCGCGGCGGCG
GCAGCAACAATGATTACGGCGACGATTACGGCGCCCCGGCGCCGTCCTCATCGTCGAACCGCGGTGGTGGCGGCGGCAAC
TTCTCGCGCGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.67

100

0.515
  ssb Vibrio cholerae strain A1552

49.143

100

0.503
  ssb Neisseria meningitidis MC58

37.43

100

0.392
  ssb Neisseria gonorrhoeae MS11

36.872

100

0.386