Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J3Q26_RS17200 Genome accession   NZ_CP071603
Coordinates   3588675..3589187 (-) Length   170 a.a.
NCBI ID   WP_005017406.1    Uniprot ID   A0A158M7H3
Organism   Bordetella holmesii strain CIDM-BH3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3581262..3588080 3588675..3589187 flank 595


Gene organization within MGE regions


Location: 3581262..3589187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q26_RS17165 (J3Q26_17165) - 3581262..3582212 (-) 951 WP_005012808.1 IS481-like element IS481 family transposase -
  J3Q26_RS17170 (J3Q26_17170) - 3582294..3583361 (-) 1068 WP_005017414.1 glycosyltransferase -
  J3Q26_RS17175 (J3Q26_17175) - 3583351..3584412 (-) 1062 WP_005017412.1 glycosyltransferase -
  J3Q26_RS17180 (J3Q26_17180) asnB 3584509..3586164 (+) 1656 WP_005017410.1 asparagine synthase (glutamine-hydrolyzing) -
  J3Q26_RS17185 (J3Q26_17185) - 3586178..3586648 (-) 471 Protein_3398 integrase core domain-containing protein -
  J3Q26_RS17190 (J3Q26_17190) - 3586756..3587706 (+) 951 WP_005012650.1 IS481-like element IS481 family transposase -
  J3Q26_RS17195 (J3Q26_17195) - 3587791..3588080 (-) 290 Protein_3400 transposase -
  J3Q26_RS17200 (J3Q26_17200) ssb 3588675..3589187 (-) 513 WP_005017406.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18356.46 Da        Isoelectric Point: 5.9702

>NTDB_id=546888 J3Q26_RS17200 WP_005017406.1 3588675..3589187(-) (ssb) [Bordetella holmesii strain CIDM-BH3]
MASVNKVILVGNLGRDPEVRYSPDGAAICNLSLATTSQWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGRDGAEGGGFGGGGGYDEAPRQQRAPAQRPAPAQRQAPAAAAPMGGGAAN
LADMDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=546888 J3Q26_RS17200 WP_005017406.1 3588675..3589187(-) (ssb) [Bordetella holmesii strain CIDM-BH3]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTGGGGCGCGACCCCGAGGTCCGCTATAGCCCGGACGGCGCGGC
AATCTGCAATCTTTCTCTGGCTACCACGTCGCAGTGGAAAGACAAGGCCTCCGGCGAGCGCCGCGAAGAAACCGAATGGC
ATCGCGTCGTCATGTACAACCGCCTGGCGGAAATCGCTGGCGAGTACCTGAAGAAAGGCCGTTCGGTTTATATCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACACCGGCGCTGACCGCTACAGCACCGAAATCGTCGCTGACCAGATGCA
GATGCTGGGCGGGCGTGATGGTGCCGAAGGCGGCGGTTTCGGCGGCGGTGGTGGTTACGACGAGGCGCCGCGCCAGCAAC
GTGCGCCTGCGCAACGCCCGGCACCGGCTCAGCGCCAGGCGCCGGCCGCAGCCGCGCCCATGGGCGGCGGCGCGGCCAAT
CTGGCCGATATGGACGACGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A158M7H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.872

100

0.571
  ssb Glaesserella parasuis strain SC1401

50

100

0.559
  ssb Neisseria gonorrhoeae MS11

50.829

100

0.541
  ssb Neisseria meningitidis MC58

50.276

100

0.535