Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J3Q23_RS21900 Genome accession   NZ_CP071602
Coordinates   4672884..4673372 (-) Length   162 a.a.
NCBI ID   WP_010927278.1    Uniprot ID   P59928
Organism   Bordetella parapertussis strain CIDM-BPP2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 4671605..4672825 4672884..4673372 flank 59


Gene organization within MGE regions


Location: 4671605..4673372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q23_RS21895 (J3Q23_21895) - 4671605..4672825 (+) 1221 WP_010927279.1 ISL3-like element IS1001 family transposase -
  J3Q23_RS21900 (J3Q23_21900) ssb 4672884..4673372 (-) 489 WP_010927278.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17783.82 Da        Isoelectric Point: 6.9849

>NTDB_id=546875 J3Q23_RS21900 WP_010927278.1 4672884..4673372(-) (ssb) [Bordetella parapertussis strain CIDM-BPP2]
MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGRDSGGGYGGGYDDAPRQQRAPAQRPAAAPQRPAPQAAPAANLADMDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=546875 J3Q23_RS21900 WP_010927278.1 4672884..4673372(-) (ssb) [Bordetella parapertussis strain CIDM-BPP2]
ATGGCATCCGTCAACAAAGTCATTCTCGTCGGCAATCTGGGTCGCGACCCGGAAGTGCGTTACAGCCCGGATGGGGCGGC
CATCTGCAACGTGTCGATCGCCACGACCTCGCAATGGAAGGACAAGGCCAGCGGCGAGCGCCGCGAGGAAACCGAATGGC
ACCGCGTGGTCATGTACAACCGCCTGGCCGAAATCGCGGGCGAATACCTGAAGAAGGGGCGTTCGGTCTACATCGAGGGC
CGCCTGAAGACCCGCAAATGGCAAGACAAGGACACCGGCGCCGACCGCTACAGCACCGAAATCGTGGCCGACCAGATGCA
GATGCTGGGCGGGCGCGATAGCGGCGGCGGTTACGGCGGTGGCTACGACGACGCACCGCGCCAGCAGCGCGCCCCGGCCC
AGCGCCCGGCGGCCGCCCCGCAGCGCCCCGCGCCGCAGGCCGCGCCGGCCGCCAACCTGGCCGACATGGACGACGATATT
CCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P59928

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.552

100

0.605
  ssb Glaesserella parasuis strain SC1401

50.543

100

0.574
  ssb Neisseria gonorrhoeae MS11

51.705

100

0.562
  ssb Neisseria meningitidis MC58

51.136

100

0.556