Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | J3R87_RS05490 | Genome accession | NZ_CP071594 |
| Coordinates | 1130338..1130841 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain PNID0137 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1126278..1150508 | 1130338..1130841 | within | 0 |
Gene organization within MGE regions
Location: 1126278..1150508
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J3R87_RS05460 (J3R87_05460) | - | 1126278..1127123 (+) | 846 | WP_001663091.1 | ParB/RepB/Spo0J family partition protein | - |
| J3R87_RS05465 (J3R87_05465) | - | 1127277..1128158 (+) | 882 | WP_000373076.1 | mechanosensitive ion channel family protein | - |
| J3R87_RS05470 (J3R87_05470) | - | 1128188..1128391 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| J3R87_RS05475 (J3R87_05475) | ychF | 1128403..1129500 (+) | 1098 | WP_001663090.1 | redox-regulated ATPase YchF | - |
| J3R87_RS05480 (J3R87_05480) | - | 1129586..1129777 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| J3R87_RS05485 (J3R87_05485) | rpsF | 1130021..1130317 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| J3R87_RS05490 (J3R87_05490) | ssbA | 1130338..1130841 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| J3R87_RS05495 (J3R87_05495) | rpsR | 1130893..1131135 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| J3R87_RS05500 (J3R87_05500) | - | 1131367..1132086 (-) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| J3R87_RS05505 (J3R87_05505) | - | 1132199..1133413 (-) | 1215 | WP_000270135.1 | site-specific integrase | - |
| J3R87_RS05510 (J3R87_05510) | - | 1133574..1134197 (-) | 624 | WP_000230361.1 | helix-turn-helix transcriptional regulator | - |
| J3R87_RS05515 (J3R87_05515) | - | 1134346..1134510 (+) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| J3R87_RS05520 (J3R87_05520) | - | 1134511..1134783 (+) | 273 | WP_001138305.1 | helix-turn-helix domain-containing protein | - |
| J3R87_RS05525 (J3R87_05525) | - | 1134795..1134968 (+) | 174 | WP_000784892.1 | hypothetical protein | - |
| J3R87_RS05530 (J3R87_05530) | - | 1134935..1135138 (+) | 204 | WP_001231376.1 | hypothetical protein | - |
| J3R87_RS05535 (J3R87_05535) | - | 1135140..1135523 (+) | 384 | WP_000403837.1 | hypothetical protein | - |
| J3R87_RS05540 (J3R87_05540) | - | 1135524..1135850 (+) | 327 | WP_001103967.1 | DUF1474 family protein | - |
| J3R87_RS05545 (J3R87_05545) | - | 1135915..1136784 (+) | 870 | WP_121611872.1 | primase alpha helix C-terminal domain-containing protein | - |
| J3R87_RS05550 (J3R87_05550) | - | 1136798..1138507 (+) | 1710 | WP_213674533.1 | DUF927 domain-containing protein | - |
| J3R87_RS05555 (J3R87_05555) | - | 1138817..1139197 (+) | 381 | WP_000356942.1 | hypothetical protein | - |
| J3R87_RS05560 (J3R87_05560) | - | 1139194..1139835 (+) | 642 | WP_001656918.1 | hypothetical protein | - |
| J3R87_RS05565 (J3R87_05565) | - | 1140543..1140887 (+) | 345 | WP_001288442.1 | hypothetical protein | - |
| J3R87_RS05570 (J3R87_05570) | - | 1140918..1141571 (+) | 654 | WP_000214170.1 | hypothetical protein | - |
| J3R87_RS05575 (J3R87_05575) | - | 1141624..1142151 (+) | 528 | WP_000771361.1 | spore coat protein | - |
| J3R87_RS05580 (J3R87_05580) | - | 1142283..1142495 (+) | 213 | WP_001656917.1 | hypothetical protein | - |
| J3R87_RS05585 (J3R87_05585) | - | 1142492..1143061 (+) | 570 | WP_001293071.1 | terminase small subunit | - |
| J3R87_RS14635 | - | 1143108..1143191 (+) | 84 | Protein_1110 | terminase small subunit | - |
| J3R87_RS05590 (J3R87_05590) | - | 1143338..1144306 (+) | 969 | WP_000801980.1 | Abi family protein | - |
| J3R87_RS05595 (J3R87_05595) | - | 1144484..1144885 (+) | 402 | WP_000683457.1 | hypothetical protein | - |
| J3R87_RS05600 (J3R87_05600) | - | 1145003..1145515 (+) | 513 | WP_213674534.1 | hypothetical protein | - |
| J3R87_RS14640 | - | 1145531..1145710 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| J3R87_RS05605 (J3R87_05605) | - | 1146474..1147481 (-) | 1008 | WP_001080636.1 | Abi family protein | - |
| J3R87_RS05610 (J3R87_05610) | - | 1147487..1148145 (-) | 659 | Protein_1116 | site-specific integrase | - |
| J3R87_RS05615 (J3R87_05615) | - | 1148438..1148806 (+) | 369 | WP_000849155.1 | YxeA family protein | - |
| J3R87_RS05620 (J3R87_05620) | - | 1148987..1149559 (+) | 573 | WP_000769723.1 | PepSY domain-containing protein | - |
| J3R87_RS05625 (J3R87_05625) | - | 1149697..1149960 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| J3R87_RS05630 (J3R87_05630) | - | 1150254..1150508 (+) | 255 | WP_000466746.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=546790 J3R87_RS05490 WP_000934799.1 1130338..1130841(+) (ssbA) [Staphylococcus aureus strain PNID0137]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=546790 J3R87_RS05490 WP_000934799.1 1130338..1130841(+) (ssbA) [Staphylococcus aureus strain PNID0137]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |