Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J2N86_RS01550 Genome accession   NZ_CP071527
Coordinates   357244..357732 (-) Length   162 a.a.
NCBI ID   WP_252580447.1    Uniprot ID   -
Organism   Legionella lytica strain PCM 2298     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 352244..362732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2N86_RS01515 (J2N86_01520) secY 352422..353750 (+) 1329 WP_252580441.1 preprotein translocase subunit SecY -
  J2N86_RS01520 (J2N86_01525) rpmJ 353769..353882 (+) 114 WP_078061441.1 50S ribosomal protein L36 -
  J2N86_RS01525 (J2N86_01530) rpsM 353961..354317 (+) 357 WP_058533023.1 30S ribosomal protein S13 -
  J2N86_RS01530 (J2N86_01535) rpsK 354339..354737 (+) 399 WP_058533024.1 30S ribosomal protein S11 -
  J2N86_RS01535 (J2N86_01540) rpsD 354756..355376 (+) 621 WP_252580443.1 30S ribosomal protein S4 -
  J2N86_RS01540 (J2N86_01545) - 355395..356387 (+) 993 WP_058533026.1 DNA-directed RNA polymerase subunit alpha -
  J2N86_RS01545 (J2N86_01550) rplQ 356406..356780 (+) 375 WP_252580445.1 50S ribosomal protein L17 -
  J2N86_RS01550 (J2N86_01555) ssb 357244..357732 (-) 489 WP_252580447.1 single-stranded DNA-binding protein Machinery gene
  J2N86_RS01555 (J2N86_01560) - 357805..358428 (-) 624 WP_252580449.1 NUDIX hydrolase -
  J2N86_RS01560 (J2N86_01565) - 358610..358714 (+) 105 WP_252580451.1 MerR family transcriptional regulator -
  J2N86_RS01565 (J2N86_01570) queF 358908..359765 (+) 858 WP_322790914.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  J2N86_RS01570 (J2N86_01575) - 360315..361856 (+) 1542 WP_252580453.1 hypothetical protein -
  J2N86_RS16200 - 361924..361986 (-) 63 Protein_305 hypothetical protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17992.87 Da        Isoelectric Point: 4.9675

>NTDB_id=545992 J2N86_RS01550 WP_252580447.1 357244..357732(-) (ssb) [Legionella lytica strain PCM 2298]
MARGINKVILIGNVGVDPDVRYLPNGNAVTTLSIATSESWKDKNTGEKQDRTEWHRVVCFNRLGEIAGEYVRKGSKLYIE
GSLRTRKWQDQQGQDRYTTEIVANDIQMLDSKGGSAGGYDDMSQAPQYAPAPQPSANRQAAAPQSNQMPHDAFDQFDDDV
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=545992 J2N86_RS01550 WP_252580447.1 357244..357732(-) (ssb) [Legionella lytica strain PCM 2298]
ATGGCTCGCGGAATAAATAAGGTCATCTTGATTGGCAACGTTGGTGTTGACCCGGATGTTCGTTACCTACCCAATGGTAA
CGCAGTAACTACTCTTTCAATTGCCACCAGTGAATCATGGAAAGATAAAAATACCGGTGAAAAGCAAGATAGAACTGAAT
GGCACCGTGTCGTTTGCTTTAATCGTCTAGGTGAAATCGCCGGCGAATACGTACGTAAAGGCTCAAAGCTTTATATTGAA
GGCAGTTTAAGAACGAGAAAATGGCAAGATCAACAAGGCCAAGATCGTTATACCACAGAAATCGTTGCCAATGATATTCA
AATGCTGGATAGTAAGGGTGGCAGTGCTGGTGGTTATGATGATATGTCGCAAGCACCACAATATGCTCCAGCGCCCCAAC
CAAGCGCTAATCGACAAGCAGCAGCACCACAATCAAATCAAATGCCGCATGATGCTTTTGATCAATTTGATGACGATGTC
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.667

100

0.574
  ssb Glaesserella parasuis strain SC1401

51.111

100

0.568
  ssb Neisseria gonorrhoeae MS11

43.931

100

0.469
  ssb Neisseria meningitidis MC58

43.353

100

0.463