Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J3P56_RS02295 Genome accession   NZ_CP071522
Coordinates   473531..474655 (+) Length   374 a.a.
NCBI ID   WP_000228509.1    Uniprot ID   -
Organism   Escherichia coli strain UPEC129     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 468531..479655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3P56_RS02270 (J3P56_02270) mscL 468648..469061 (-) 414 WP_000022450.1 large-conductance mechanosensitive channel protein MscL -
  J3P56_RS02275 (J3P56_02275) trkA 469191..470567 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  J3P56_RS02280 (J3P56_02280) rsmB 470589..471878 (-) 1290 WP_000744766.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  J3P56_RS02285 (J3P56_02285) fmt 471930..472877 (-) 948 WP_000004421.1 methionyl-tRNA formyltransferase -
  J3P56_RS02290 (J3P56_02290) def 472892..473401 (-) 510 WP_000114984.1 peptide deformylase -
  J3P56_RS02295 (J3P56_02295) dprA 473531..474655 (+) 1125 WP_000228509.1 DNA-protecting protein DprA Machinery gene
  J3P56_RS02300 (J3P56_02300) smg 474627..475100 (+) 474 WP_000460672.1 DUF494 family protein Smg -
  J3P56_RS02305 (J3P56_02305) yrdD 475129..475671 (+) 543 WP_001312137.1 type I DNA topoisomerase -
  J3P56_RS02310 (J3P56_02310) tsaC 475676..476248 (+) 573 WP_001297709.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  J3P56_RS02315 (J3P56_02315) aroE 476253..477071 (+) 819 WP_000451230.1 shikimate dehydrogenase -
  J3P56_RS02320 (J3P56_02320) yrdB 477068..477325 (+) 258 WP_001070567.1 DUF1488 domain-containing protein -
  J3P56_RS02325 (J3P56_02325) yrdA 477301..477855 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40991.96 Da        Isoelectric Point: 6.1815

>NTDB_id=545969 J3P56_RS02295 WP_000228509.1 473531..474655(+) (dprA) [Escherichia coli strain UPEC129]
MVDTEIWLRLISISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWRRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHAPLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=545969 J3P56_RS02295 WP_000228509.1 473531..474655(+) (dprA) [Escherichia coli strain UPEC129]
ATGGTTGATACAGAAATTTGGCTGCGTTTAATTAGCATCAGCAGCTTGTATGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGTTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGAGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTTAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGCCATGCTCCACTGGCTGCCAGTCTACT
TGAGCAAGGTGGTGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCTTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (DprA_WH)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.78

98.663

0.481
  dprA Vibrio cholerae strain A1552

49.032

82.888

0.406
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Haemophilus influenzae Rd KW20

43.917

90.107

0.396
  dprA Legionella pneumophila strain ERS1305867

44.242

88.235

0.39