Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I8J32_RS17105 Genome accession   NZ_CP071518
Coordinates   3865396..3865908 (-) Length   170 a.a.
NCBI ID   WP_207526695.1    Uniprot ID   -
Organism   Agrilutibacter solisilvae strain R19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3860396..3870908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8J32_RS17085 (I8J32_017085) rfbD 3861782..3862681 (-) 900 WP_207526694.1 dTDP-4-dehydrorhamnose reductase -
  I8J32_RS17090 (I8J32_017090) rfbC 3862695..3863252 (-) 558 WP_200613899.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  I8J32_RS17095 (I8J32_017095) rfbA 3863249..3864136 (-) 888 WP_200613901.1 glucose-1-phosphate thymidylyltransferase RfbA -
  I8J32_RS17100 (I8J32_017100) rfbB 3864218..3865273 (-) 1056 WP_200613903.1 dTDP-glucose 4,6-dehydratase -
  I8J32_RS17105 (I8J32_017105) ssb 3865396..3865908 (-) 513 WP_207526695.1 single-stranded DNA-binding protein Machinery gene
  I8J32_RS17110 (I8J32_017110) - 3866266..3867228 (-) 963 WP_200613906.1 AraC family transcriptional regulator -
  I8J32_RS17115 (I8J32_017115) - 3867581..3868705 (+) 1125 WP_200613907.1 sensor histidine kinase -
  I8J32_RS17120 (I8J32_017120) - 3868702..3869493 (+) 792 WP_200613908.1 LytTR family DNA-binding domain-containing protein -
  I8J32_RS17125 (I8J32_017125) - 3869699..3870676 (+) 978 WP_245156539.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18153.07 Da        Isoelectric Point: 5.3812

>NTDB_id=545919 I8J32_RS17105 WP_207526695.1 3865396..3865908(-) (ssb) [Agrilutibacter solisilvae strain R19]
MARGINKVILVGNLGNDPETKYTQGGMAVTTISLATTSARKDKDGQLQERTEWHRVKFFGKLGEIAGEYLRKGSQVYVEG
SIRYDKFTGEDGVEKYFTDIVADEMQMLGGKPGEGGGGGGGAPRREYSGGGGGERGGRPAPRQDGAPRREAPAAKSNDFG
TDFADDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=545919 I8J32_RS17105 WP_207526695.1 3865396..3865908(-) (ssb) [Agrilutibacter solisilvae strain R19]
ATGGCACGTGGCATCAACAAGGTCATCCTGGTCGGCAACCTCGGCAATGATCCCGAGACCAAATACACCCAGGGCGGCAT
GGCCGTCACCACGATCAGCCTGGCCACCACCAGCGCCCGCAAGGACAAGGATGGCCAGCTCCAGGAGCGGACCGAGTGGC
ACCGGGTGAAGTTCTTCGGAAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
TCGATCCGCTACGACAAGTTCACCGGCGAGGACGGGGTTGAGAAGTACTTCACCGACATCGTCGCCGACGAGATGCAGAT
GCTCGGCGGCAAGCCGGGCGAGGGCGGCGGTGGCGGCGGCGGTGCTCCCCGGCGCGAATACTCCGGCGGCGGTGGTGGCG
AGCGCGGCGGGCGTCCGGCACCGCGCCAGGACGGCGCCCCGCGCCGCGAGGCGCCGGCGGCCAAGTCCAACGACTTCGGC
ACCGATTTCGCCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

45.055

100

0.482
  ssb Vibrio cholerae strain A1552

45.198

100

0.471
  ssb Neisseria gonorrhoeae MS11

44.318

100

0.459
  ssb Glaesserella parasuis strain SC1401

41.398

100

0.453