Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HIV01_RS00535 Genome accession   NZ_CP071517
Coordinates   105127..105639 (+) Length   170 a.a.
NCBI ID   WP_200604348.1    Uniprot ID   -
Organism   Lysobacter arenosi strain R7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 100127..110639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIV01_RS00510 (HIV01_000510) murD 100589..102007 (+) 1419 WP_200604344.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  HIV01_RS00515 (HIV01_000515) - 102110..102895 (+) 786 WP_200604345.1 dienelactone hydrolase family protein -
  HIV01_RS00520 (HIV01_000520) - 102906..103919 (-) 1014 WP_207527035.1 polyprenyl synthetase family protein -
  HIV01_RS00525 (HIV01_000525) - 104140..104493 (+) 354 WP_200604347.1 hypothetical protein -
  HIV01_RS00530 (HIV01_000530) - 104589..104918 (+) 330 WP_245156876.1 DUF5076 domain-containing protein -
  HIV01_RS00535 (HIV01_000535) ssb 105127..105639 (+) 513 WP_200604348.1 single-stranded DNA-binding protein Machinery gene
  HIV01_RS00540 (HIV01_000540) rfbB 105693..106745 (+) 1053 WP_200604349.1 dTDP-glucose 4,6-dehydratase -
  HIV01_RS00545 (HIV01_000545) rfbA 106756..107640 (+) 885 WP_200604350.1 glucose-1-phosphate thymidylyltransferase RfbA -
  HIV01_RS00550 (HIV01_000550) rfbC 107637..108194 (+) 558 WP_200604351.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  HIV01_RS00555 (HIV01_000555) rfbD 108191..109084 (+) 894 WP_207527036.1 dTDP-4-dehydrorhamnose reductase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18411.23 Da        Isoelectric Point: 5.4119

>NTDB_id=545888 HIV01_RS00535 WP_200604348.1 105127..105639(+) (ssb) [Lysobacter arenosi strain R7]
MARGINKVILVGNLGDDPETKYTQGGMAVTKARLATTSVRKDREGNTQERTEWHRVTFFGKLGEIAGEYLRKGSQVYVEG
SIRYDKYTGQDGVERYSTDIIADEMQMLGGRGEGGGGGGGAGRGEFRGGGDRSERPARAPARQESAPRREAPAAKSNDFA
DDFADDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=545888 HIV01_RS00535 WP_200604348.1 105127..105639(+) (ssb) [Lysobacter arenosi strain R7]
ATGGCACGTGGCATCAACAAGGTGATCCTGGTCGGCAATCTCGGTGACGATCCGGAAACCAAGTACACCCAGGGCGGCAT
GGCCGTGACGAAGGCCCGCCTGGCCACCACCAGCGTGCGCAAGGACCGTGAGGGCAACACCCAGGAGCGCACCGAATGGC
ACCGGGTGACCTTCTTCGGAAAGCTTGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGTAGCCAGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGTGTCGAGCGTTACTCCACCGACATCATTGCCGACGAGATGCAGAT
GCTCGGTGGCCGTGGTGAAGGCGGCGGTGGCGGCGGTGGTGCCGGCCGCGGTGAGTTCCGCGGTGGCGGCGATCGCAGCG
AGCGTCCGGCCCGCGCGCCGGCGCGGCAGGAATCGGCACCGCGTCGCGAGGCGCCGGCCGCCAAGTCCAACGACTTCGCC
GATGATTTCGCCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.328

100

0.482
  ssb Neisseria meningitidis MC58

46.591

100

0.482
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.482
  ssb Glaesserella parasuis strain SC1401

39.791

100

0.447