Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J2N82_RS07385 Genome accession   NZ_CP071505
Coordinates   1482865..1483908 (-) Length   347 a.a.
NCBI ID   WP_070442342.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain 12b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1477865..1488908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2N82_RS07370 (J2N82_07370) - 1479476..1480270 (-) 795 WP_070442348.1 TIGR00282 family metallophosphoesterase -
  J2N82_RS07375 (J2N82_07375) - 1480430..1480645 (+) 216 WP_037537291.1 hypothetical protein -
  J2N82_RS07380 (J2N82_07380) rny 1480919..1482478 (-) 1560 WP_070442345.1 ribonuclease Y -
  J2N82_RS07385 (J2N82_07385) recA 1482865..1483908 (-) 1044 WP_070442342.1 recombinase RecA Machinery gene
  J2N82_RS07390 (J2N82_07390) - 1484083..1485225 (-) 1143 WP_070860860.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  J2N82_RS07395 (J2N82_07395) pgsA 1485380..1485955 (-) 576 WP_207323391.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J2N82_RS07400 (J2N82_07400) - 1485989..1486381 (-) 393 WP_070860850.1 helix-turn-helix domain-containing protein -
  J2N82_RS07405 (J2N82_07405) - 1486403..1487233 (-) 831 WP_070860849.1 YmfK family protein -
  J2N82_RS07410 (J2N82_07410) - 1487407..1488111 (-) 705 WP_070860848.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37694.65 Da        Isoelectric Point: 5.0030

>NTDB_id=545804 J2N82_RS07385 WP_070442342.1 1482865..1483908(-) (recA) [Staphylococcus haemolyticus strain 12b]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKIYLKENPQVKEEIDR
KLREKLGIFDGDVDEKEDAPQTLFDEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=545804 J2N82_RS07385 WP_070442342.1 1482865..1483908(-) (recA) [Staphylococcus haemolyticus strain 12b]
TTGGATAATGATCGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAAAAATCATTCGGTAAAGGTGCCGTTATGAA
ACTAGGCGATAATAAAGGACGCCGTGTTTCAAGTGTTTCAAGTGGTTCAGTTACATTAGATAACGCACTAGGTGTAGGTG
GATATCCTAAAGGTAGAATTATAGAGATTTATGGACCAGAAAGTTCTGGTAAAACAACAGTAGCTTTACATGCTATTGCG
GAGGTACAAAAGAACGGTGGCGTTGCTGCATTTATCGATGCCGAACACGCACTTGATCCGGTATATGCAGAAGCATTAGG
TGTAGATATTGATAATTTATATCTATCACAACCAGACCATGGTGAACAAGGTTTAGAGATTGCTGAAGCTTTCGTTCGAA
GTGGTGCGGTTGATATTGTAGTAGTTGACTCTGTTGCCGCATTAACACCTAAAGCAGAAATTGAAGGTGAAATGGGCGAT
ACGCATGTAGGACTTCAAGCTCGTTTAATGTCACAGGCGTTACGTAAATTATCTGGTGCAATTTCAAAATCAAATACAAC
AGCCATTTTCATTAATCAAATTCGTGAAAAAGTTGGTGTAATGTTTGGTAACCCAGAAACTACACCTGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTTCGTTTAGAAGTTCGTCGTGCTGAGCAGTTAAAACAAGGCCAAGAAATTGTTGGTAACAGA
ACTAAAATTAAAGTTGTCAAAAACAAAGTTGCACCACCTTTTAGAGTCGCTGAAGTAGATATTATGTATGGTCAAGGTAT
CTCTAAAGAAGGTGAATTGATTGATCTTGGTGTTGAAAATGACATCGTAGATAAATCAGGTGCATGGTACTCATATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAATGTAAAAATATACCTTAAAGAAAATCCTCAAGTTAAAGAAGAAATCGATCGT
AAGTTACGAGAAAAACTTGGTATTTTCGATGGAGATGTTGATGAAAAAGAAGATGCACCGCAAACCTTATTCGATGAAGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.994

93.948

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

70.882

97.983

0.695
  recA Streptococcus pyogenes NZ131

68.693

94.813

0.651
  recA Streptococcus pneumoniae R6

64.655

100

0.648
  recA Streptococcus pneumoniae Rx1

64.655

100

0.648
  recA Streptococcus pneumoniae D39

64.655

100

0.648
  recA Streptococcus pneumoniae TIGR4

64.655

100

0.648
  recA Streptococcus mutans UA159

64

100

0.646
  recA Acinetobacter baylyi ADP1

64.265

100

0.643
  recA Streptococcus mitis SK321

66.366

95.965

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.897

97.695

0.634
  recA Streptococcus mitis NCTC 12261

66.066

95.965

0.634
  recA Lactococcus lactis subsp. cremoris KW2

66.163

95.389

0.631
  recA Acinetobacter baumannii D1279779

66.871

93.948

0.628
  recA Neisseria gonorrhoeae strain FA1090

66.261

94.813

0.628
  recA Neisseria gonorrhoeae MS11

66.261

94.813

0.628
  recA Neisseria gonorrhoeae MS11

66.261

94.813

0.628
  recA Helicobacter pylori 26695

65.549

94.524

0.62
  recA Helicobacter pylori strain NCTC11637

65.244

94.524

0.617
  recA Vibrio cholerae strain A1552

65.337

93.948

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.337

93.948

0.614
  recA Ralstonia pseudosolanacearum GMI1000

65.815

90.202

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.934

95.389

0.591
  recA Pseudomonas stutzeri DSM 10701

62.27

93.948

0.585
  recA Glaesserella parasuis strain SC1401

61.3

93.084

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

91.066

0.559