Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LO000_RS16715 Genome accession   NZ_CP087354
Coordinates   3437523..3437885 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain DB002     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3432523..3442885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO000_RS16705 - 3434801..3436879 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  LO000_RS16710 - 3436926..3437462 (-) 537 WP_000729762.1 chemotaxis protein CheW -
  LO000_RS16715 pilH 3437523..3437885 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  LO000_RS16720 pilG 3437909..3438292 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  LO000_RS16725 - 3438575..3439213 (+) 639 WP_001985941.1 hypothetical protein -
  LO000_RS16730 - 3439273..3440391 (+) 1119 WP_001260822.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=545803 LO000_RS16715 WP_000101096.1 3437523..3437885(-) (pilH) [Acinetobacter baumannii strain DB002]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=545803 LO000_RS16715 WP_000101096.1 3437523..3437885(-) (pilH) [Acinetobacter baumannii strain DB002]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392