Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JYB88_RS02845 Genome accession   NZ_CP071504
Coordinates   681822..682517 (+) Length   231 a.a.
NCBI ID   WP_207325429.1    Uniprot ID   A0A975ALV6
Organism   Shewanella cyperi strain FJAT-53726     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 676822..687517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB88_RS02835 (JYB88_02835) uvrA 677333..680161 (-) 2829 WP_207325427.1 excinuclease ABC subunit UvrA -
  JYB88_RS02840 (JYB88_02840) - 680420..681787 (+) 1368 WP_207325428.1 MFS transporter -
  JYB88_RS02845 (JYB88_02845) ssb 681822..682517 (+) 696 WP_207325429.1 single-stranded DNA-binding protein Machinery gene
  JYB88_RS02850 (JYB88_02850) - 682600..683196 (-) 597 WP_207325430.1 hypothetical protein -
  JYB88_RS02855 (JYB88_02855) - 683601..684008 (-) 408 WP_207325431.1 hypothetical protein -
  JYB88_RS02860 (JYB88_02860) - 684476..685399 (-) 924 WP_207325432.1 GGDEF domain-containing protein -
  JYB88_RS02865 (JYB88_02865) - 685575..686147 (+) 573 WP_207321958.1 hypothetical protein -
  JYB88_RS02870 (JYB88_02870) - 686176..687009 (-) 834 WP_266097405.1 DMT family transporter -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25047.45 Da        Isoelectric Point: 5.9131

>NTDB_id=545759 JYB88_RS02845 WP_207325429.1 681822..682517(+) (ssb) [Shewanella cyperi strain FJAT-53726]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDNQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYTTEIVVDQSGSMQMLGGRAQGQGQGAPMGGQAQAGQQGGYSAPAQNQYAAAPQQGGYSAPAQG
GYQQPQQAQQQAGFGQAPQQAAYQPKPQQAAPAYQPQQAPQQRPAPKPQAQPQQQSYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 696 bp        

>NTDB_id=545759 JYB88_RS02845 WP_207325429.1 681822..682517(+) (ssb) [Shewanella cyperi strain FJAT-53726]
ATGGCCAGTCGTGGTGTGAATAAGGTGATTCTGGTAGGCAACCTGGGACAAGATCCCGAAGTTCGCTATATGCCCAATGG
CAACGCCGTTGCCAATATCACAGTTGCCACCAGCGAAAGCTGGAAAGACAACCAGGGTCAGCAACAGGAACGCACCGAGT
GGCACAGGGTGGTTATGTTCGGCAAGCTGGCCGAAATTGCCGGTGAATACCTGCGCAAGGGCTCCCAGGTGTACCTGGAA
GGCAAGCTGCAGACCCGTAAGTGGAAAGATCAGAGCGGCCAGGACAGATACACCACAGAGATAGTGGTCGATCAGAGCGG
CAGCATGCAGATGCTCGGTGGTCGTGCCCAAGGTCAAGGTCAGGGCGCCCCCATGGGTGGTCAAGCTCAAGCTGGCCAGC
AGGGTGGTTACAGTGCCCCGGCTCAGAACCAATACGCTGCAGCGCCACAACAGGGCGGTTACAGTGCCCCGGCTCAGGGT
GGTTATCAGCAACCTCAACAAGCTCAGCAGCAGGCTGGTTTTGGTCAGGCACCTCAGCAGGCCGCCTATCAGCCCAAGCC
ACAACAGGCGGCTCCGGCTTATCAGCCACAGCAGGCCCCACAGCAGCGCCCCGCACCCAAGCCACAGGCCCAGCCACAAC
AGCAAAGCTATACCCCGGATCTGGATGACGGCTGGGACGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.936

100

0.554
  ssb Glaesserella parasuis strain SC1401

46.93

98.701

0.463
  ssb Neisseria gonorrhoeae MS11

42.731

98.268

0.42
  ssb Neisseria meningitidis MC58

41.85

98.268

0.411