Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JYB84_RS02865 Genome accession   NZ_CP071501
Coordinates   693376..694077 (+) Length   233 a.a.
NCBI ID   WP_207321954.1    Uniprot ID   -
Organism   Shewanella cyperi strain FJAT-53720     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 688376..699077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB84_RS02855 (JYB84_02855) uvrA 688903..691731 (-) 2829 WP_207321952.1 excinuclease ABC subunit UvrA -
  JYB84_RS02860 (JYB84_02860) - 691974..693341 (+) 1368 WP_207321953.1 MFS transporter -
  JYB84_RS02865 (JYB84_02865) ssb 693376..694077 (+) 702 WP_207321954.1 single-stranded DNA-binding protein Machinery gene
  JYB84_RS02870 (JYB84_02870) - 694161..694934 (-) 774 WP_207321955.1 hypothetical protein -
  JYB84_RS02875 (JYB84_02875) - 695162..695569 (-) 408 WP_207321956.1 hypothetical protein -
  JYB84_RS02880 (JYB84_02880) - 696037..696960 (-) 924 WP_207321957.1 sensor domain-containing diguanylate cyclase -
  JYB84_RS02885 (JYB84_02885) - 697136..697708 (+) 573 WP_207321958.1 hypothetical protein -
  JYB84_RS02890 (JYB84_02890) - 697737..698570 (-) 834 WP_266097107.1 DMT family transporter -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 25214.62 Da        Isoelectric Point: 5.9131

>NTDB_id=545690 JYB84_RS02865 WP_207321954.1 693376..694077(+) (ssb) [Shewanella cyperi strain FJAT-53720]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDNQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQNGQDRYTTEIVVDQSGSMQMLGGRAQGQGQGQGAPMGGQAQAGQQGGYSAPAQNQYAAAPQQGGYSAPA
QGGYQQPQQAQPQAGFGQAPQQGAYQPKPQQAAPAYQPQQAPQQRPAPKPQAQPQQQSYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 702 bp        

>NTDB_id=545690 JYB84_RS02865 WP_207321954.1 693376..694077(+) (ssb) [Shewanella cyperi strain FJAT-53720]
ATGGCCAGTCGTGGTGTGAATAAGGTGATTCTGGTAGGCAACCTGGGACAAGATCCCGAAGTTCGCTATATGCCCAATGG
CAACGCCGTTGCCAATATCACAGTTGCCACCAGCGAAAGCTGGAAAGACAACCAGGGTCAGCAACAGGAACGCACCGAGT
GGCACAGGGTGGTTATGTTCGGCAAGCTGGCCGAAATTGCCGGTGAATACCTGCGCAAGGGCTCCCAGGTGTACCTGGAA
GGCAAGCTGCAGACCCGTAAGTGGAAAGATCAGAACGGCCAGGACAGATACACCACAGAGATAGTGGTCGATCAGAGCGG
CAGCATGCAGATGCTCGGTGGTCGTGCCCAAGGTCAAGGTCAAGGTCAGGGCGCCCCCATGGGTGGTCAAGCTCAAGCTG
GCCAGCAGGGTGGTTACAGTGCCCCGGCTCAGAACCAATACGCTGCAGCGCCACAACAGGGCGGTTACAGTGCCCCGGCT
CAGGGTGGTTATCAGCAACCTCAACAAGCTCAGCCGCAGGCTGGTTTTGGTCAGGCACCTCAGCAGGGCGCCTATCAGCC
CAAGCCACAACAGGCGGCTCCGGCTTATCAGCCACAGCAGGCCCCACAGCAGCGCCCAGCGCCCAAGCCGCAGGCCCAGC
CACAACAGCAAAGCTATACCCCGGATCTGGATGACGGCTGGGACGATGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.39

100

0.541
  ssb Glaesserella parasuis strain SC1401

46.957

98.712

0.464
  ssb Neisseria gonorrhoeae MS11

42.358

98.283

0.416
  ssb Neisseria meningitidis MC58

41.921

98.283

0.412