Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J1G54_RS11485 Genome accession   NZ_CP071491
Coordinates   2285111..2286238 (+) Length   375 a.a.
NCBI ID   WP_207342737.1    Uniprot ID   A0AAX1M494
Organism   Glaesserella parasuis strain GHP1807     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2267587..2296710 2285111..2286238 within 0


Gene organization within MGE regions


Location: 2267587..2296710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G54_RS11360 (J1G54_11360) - 2269011..2269586 (+) 576 WP_075630754.1 Panacea domain-containing protein -
  J1G54_RS11365 (J1G54_11365) - 2269583..2270041 (+) 459 WP_075630753.1 hypothetical protein -
  J1G54_RS11370 (J1G54_11370) - 2270150..2270872 (+) 723 WP_075630752.1 hypothetical protein -
  J1G54_RS11375 (J1G54_11375) - 2270912..2272120 (-) 1209 Protein_2207 IS256 family transposase -
  J1G54_RS11380 (J1G54_11380) - 2272422..2272628 (+) 207 WP_164689329.1 helix-turn-helix transcriptional regulator -
  J1G54_RS11385 (J1G54_11385) - 2272645..2273034 (+) 390 WP_160405517.1 hypothetical protein -
  J1G54_RS11390 (J1G54_11390) - 2273018..2273320 (+) 303 WP_160405515.1 hypothetical protein -
  J1G54_RS11395 (J1G54_11395) - 2273310..2273783 (+) 474 WP_160405513.1 hypothetical protein -
  J1G54_RS11400 (J1G54_11400) - 2273771..2274208 (+) 438 WP_234885786.1 terminase small subunit -
  J1G54_RS11405 (J1G54_11405) - 2274263..2274514 (+) 252 Protein_2213 Rha family transcriptional regulator -
  J1G54_RS11410 (J1G54_11410) - 2274529..2275287 (+) 759 WP_005713034.1 phage antirepressor Ant -
  J1G54_RS11415 (J1G54_11415) - 2275335..2276285 (+) 951 WP_207342736.1 host cell division inhibitor Icd-like protein -
  J1G54_RS11420 (J1G54_11420) - 2276278..2276550 (+) 273 WP_078208515.1 hypothetical protein -
  J1G54_RS11425 (J1G54_11425) - 2276543..2276851 (+) 309 WP_164689331.1 hypothetical protein -
  J1G54_RS11430 (J1G54_11430) - 2276844..2277179 (+) 336 WP_075630742.1 hypothetical protein -
  J1G54_RS11435 (J1G54_11435) - 2277176..2277583 (+) 408 WP_075630741.1 hypothetical protein -
  J1G54_RS11440 (J1G54_11440) - 2277567..2279753 (+) 2187 WP_203399102.1 DUF927 domain-containing protein -
  J1G54_RS11445 (J1G54_11445) - 2280375..2280650 (+) 276 WP_075630739.1 type II toxin-antitoxin system RelE family toxin -
  J1G54_RS11450 (J1G54_11450) - 2280689..2281069 (+) 381 WP_075630738.1 helix-turn-helix domain-containing protein -
  J1G54_RS11455 (J1G54_11455) - 2281812..2281952 (-) 141 WP_157686074.1 hypothetical protein -
  J1G54_RS11460 (J1G54_11460) - 2282100..2282405 (-) 306 WP_021110192.1 hypothetical protein -
  J1G54_RS11465 (J1G54_11465) - 2282365..2282508 (-) 144 WP_005712666.1 hypothetical protein -
  J1G54_RS11470 (J1G54_11470) rfaD 2282600..2283526 (-) 927 WP_005712668.1 ADP-glyceromanno-heptose 6-epimerase -
  J1G54_RS11475 (J1G54_11475) def 2283538..2284050 (-) 513 WP_005712670.1 peptide deformylase -
  J1G54_RS11480 (J1G54_11480) - 2284268..2285086 (+) 819 WP_021114360.1 Bro-N domain-containing protein -
  J1G54_RS11485 (J1G54_11485) dprA 2285111..2286238 (+) 1128 WP_207342737.1 DNA-processing protein DprA Machinery gene
  J1G54_RS11490 (J1G54_11490) - 2286291..2287127 (+) 837 WP_010787337.1 heme/hemin ABC transporter substrate-binding protein -
  J1G54_RS11495 (J1G54_11495) - 2287127..2288113 (+) 987 WP_078208661.1 FecCD family ABC transporter permease -
  J1G54_RS11500 (J1G54_11500) - 2288113..2288901 (+) 789 WP_207342738.1 heme ABC transporter ATP-binding protein -
  J1G54_RS11505 (J1G54_11505) - 2289527..2294065 (+) 4539 WP_207342739.1 YadA-like family protein -
  J1G54_RS11510 (J1G54_11510) - 2294129..2294412 (-) 284 Protein_2234 transposase -
  J1G54_RS11515 (J1G54_11515) - 2294403..2294561 (-) 159 Protein_2235 IS256 family transposase -
  J1G54_RS11520 (J1G54_11520) rpoH 2294803..2295750 (-) 948 WP_005711000.1 RNA polymerase sigma factor RpoH -
  J1G54_RS11525 (J1G54_11525) xerC 2295808..2296710 (-) 903 WP_080513250.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 41753.77 Da        Isoelectric Point: 5.2425

>NTDB_id=545683 J1G54_RS11485 WP_207342737.1 2285111..2286238(+) (dprA) [Glaesserella parasuis strain GHP1807]
MTHLTKLLALLQVPQLGAQRIGRLLSEVDFGEFCQYDKTALKQMGWNERQIQRWFNPEHKWIDQALQWAEQDQQQILTLF
DEDYPFLLKQISTAPPVLFVRGNVESLSLPQIAIVGSRDYSHYGEHWAGHFSAELVKHQLAVTSGLAIGIDGFCHQRAVN
ENGITIAVLGSGLDQVYPARHKKLAEQIVDTSGALVSEFFPSQPPIAENFPRRNRIISGLSLGTLVIEATVNSGSLITAR
YALEQGREVFALPNAVQNPYSEGCHKLIKEGALLVENIDDILEAIVWQRQSVHIQPSLFDTKPKQAVKSEPKFAKNLPEL
TACQQQLFEQISLEPISIDDLAKATDMAVETALIELLNLELLGVVKQVSGGYVIT

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=545683 J1G54_RS11485 WP_207342737.1 2285111..2286238(+) (dprA) [Glaesserella parasuis strain GHP1807]
ATGACACATCTCACAAAATTATTAGCCCTGTTACAAGTGCCACAGCTTGGCGCACAACGTATCGGGCGGTTACTCTCGGA
AGTGGACTTTGGCGAATTTTGTCAATATGACAAAACCGCATTAAAGCAAATGGGCTGGAATGAACGGCAAATTCAGCGTT
GGTTTAATCCTGAGCATAAATGGATTGATCAGGCGTTACAATGGGCAGAACAGGATCAGCAACAGATTTTAACCTTATTT
GACGAAGATTATCCTTTTTTATTGAAGCAGATCAGTACTGCTCCCCCTGTGCTTTTTGTGCGGGGGAATGTTGAAAGTTT
ATCGTTACCGCAGATAGCCATCGTTGGCAGTCGAGATTATTCCCACTATGGCGAACACTGGGCTGGGCATTTTTCGGCGG
AATTAGTGAAACATCAACTTGCTGTCACTAGTGGCTTAGCCATAGGCATAGACGGATTTTGTCATCAGCGTGCGGTCAAT
GAAAACGGGATTACTATTGCGGTTTTAGGCAGTGGTTTAGACCAAGTTTACCCTGCTCGCCACAAAAAACTTGCTGAACA
AATCGTTGATACAAGCGGTGCATTAGTGTCGGAATTTTTCCCTAGCCAGCCACCGATTGCTGAAAATTTCCCTAGACGAA
ATCGCATCATCAGCGGATTATCTCTCGGCACATTGGTTATTGAAGCCACGGTGAACAGTGGCTCGCTCATCACTGCCCGT
TATGCGTTAGAGCAAGGGAGAGAAGTCTTTGCATTGCCGAACGCAGTTCAAAACCCATATAGCGAAGGGTGCCATAAATT
GATTAAAGAAGGGGCATTACTGGTTGAAAATATTGATGACATTTTAGAAGCGATTGTGTGGCAACGGCAATCAGTGCATA
TTCAACCAAGTCTATTTGATACGAAACCTAAACAAGCGGTGAAATCCGAACCCAAATTTGCAAAAAATCTACCTGAACTG
ACCGCTTGTCAGCAACAATTGTTTGAACAGATTAGCCTTGAGCCGATCAGCATTGATGATCTTGCCAAAGCGACGGATAT
GGCGGTAGAAACCGCATTGATTGAGCTGCTGAATTTGGAGTTGTTGGGTGTTGTGAAGCAGGTGAGTGGGGGGTATGTAA
TCACTTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(313-371)

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

97.867

100

0.979
  dprA Haemophilus influenzae Rd KW20

53.235

90.667

0.483
  dprA Vibrio campbellii strain DS40M4

46.649

99.467

0.464
  dprA Vibrio cholerae strain A1552

43.617

100

0.437
  dprA Legionella pneumophila strain ERS1305867

38.889

100

0.392