Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J1G54_RS06105 Genome accession   NZ_CP071491
Coordinates   1197220..1197762 (-) Length   180 a.a.
NCBI ID   WP_207342896.1    Uniprot ID   A0AAX1M8B7
Organism   Glaesserella parasuis strain GHP1807     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1192220..1202762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G54_RS06080 (J1G54_06080) argF 1192565..1193575 (-) 1011 WP_207342894.1 ornithine carbamoyltransferase -
  J1G54_RS06085 (J1G54_06085) - 1193724..1194002 (+) 279 WP_005712614.1 type II toxin-antitoxin system RelE/ParE family toxin -
  J1G54_RS06090 (J1G54_06090) - 1194013..1194285 (+) 273 WP_005712616.1 HigA family addiction module antitoxin -
  J1G54_RS06095 (J1G54_06095) rhlB 1194349..1195569 (+) 1221 WP_207342895.1 ATP-dependent RNA helicase RhlB -
  J1G54_RS06100 (J1G54_06100) - 1195579..1197066 (+) 1488 WP_062923800.1 helicase HerA-like C-terminal domain-containing protein -
  J1G54_RS06105 (J1G54_06105) ssb 1197220..1197762 (-) 543 WP_207342896.1 single-stranded DNA-binding protein Machinery gene
  J1G54_RS06110 (J1G54_06110) uvrA 1198065..1200893 (+) 2829 WP_207342897.1 excinuclease ABC subunit UvrA -
  J1G54_RS06115 (J1G54_06115) - 1200977..1201357 (+) 381 WP_010786782.1 YacL family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19910.73 Da        Isoelectric Point: 4.9833

>NTDB_id=545670 J1G54_RS06105 WP_207342896.1 1197220..1197762(-) (ssb) [Glaesserella parasuis strain GHP1807]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREATEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGSGWNQAPAQTNYNQGGYSDNYAQNNNFNGGNATRPQPA
QKPAAQAEPPMDNFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=545670 J1G54_RS06105 WP_207342896.1 1197220..1197762(-) (ssb) [Glaesserella parasuis strain GHP1807]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCAGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGCCACCGAATGGC
ACCGTATCGTTTTCTTCCGTCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTACAAAT
GTTAGACAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTAGCGGTTGGAACCAAGCACCAGCGCAAACCAACT
ACAATCAAGGCGGCTACAGCGACAACTATGCTCAAAATAACAACTTCAATGGGGGCAACGCAACCAGACCGCAACCAGCC
CAAAAACCTGCGGCTCAAGCAGAACCACCAATGGATAATTTTGATGATGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

99.444

100

0.994
  ssb Vibrio cholerae strain A1552

50.265

100

0.528
  ssb Neisseria gonorrhoeae MS11

44.505

100

0.45
  ssb Neisseria meningitidis MC58

43.956

100

0.444