Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J1G53_RS04980 Genome accession   NZ_CP071490
Coordinates   1055058..1055576 (+) Length   172 a.a.
NCBI ID   WP_075605585.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1808     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1050058..1060576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G53_RS04965 (J1G53_04965) - 1051382..1051633 (-) 252 WP_202113892.1 hypothetical protein -
  J1G53_RS04970 (J1G53_04970) - 1051599..1051979 (-) 381 WP_010786782.1 YacL family protein -
  J1G53_RS04975 (J1G53_04975) uvrA 1052064..1054892 (-) 2829 WP_075592630.1 excinuclease ABC subunit UvrA -
  J1G53_RS04980 (J1G53_04980) ssb 1055058..1055576 (+) 519 WP_075605585.1 single-stranded DNA-binding protein Machinery gene
  J1G53_RS04985 (J1G53_04985) - 1055782..1056996 (+) 1215 WP_112062944.1 ATP-binding protein -
  J1G53_RS04990 (J1G53_04990) - 1057068..1057319 (-) 252 Protein_964 helicase HerA-like domain-containing protein -
  J1G53_RS04995 (J1G53_04995) rhlB 1057386..1058606 (-) 1221 WP_207342590.1 ATP-dependent RNA helicase RhlB -
  J1G53_RS05000 (J1G53_05000) - 1058670..1058942 (-) 273 WP_005712616.1 HigA family addiction module antitoxin -
  J1G53_RS05005 (J1G53_05005) - 1058953..1059231 (-) 279 WP_012621703.1 type II toxin-antitoxin system RelE/ParE family toxin -
  J1G53_RS05010 (J1G53_05010) argF 1059380..1060390 (+) 1011 WP_005712612.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19245.11 Da        Isoelectric Point: 4.8252

>NTDB_id=545645 J1G53_RS04980 WP_075605585.1 1055058..1055576(+) (ssb) [Glaesserella parasuis strain GHP1808]
MAGVNKVIIVGNLGNAPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSGDQGGGWNQTPTDYNQDGYTDSYDQNNNVNGGNATRPRPTPKPAAQAE
PPMDNFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=545645 J1G53_RS04980 WP_075605585.1 1055058..1055576(+) (ssb) [Glaesserella parasuis strain GHP1808]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAACGCCCCTGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGTGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAAGTCACTGAATGGC
ACCGTATCGTTTTCTTCCGCCGTCAAGCAGAAGTCGCAGGACAATACTTACGCAAAGGCTCAAAAGTCTATGTAGAAGGC
AAACTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTGCTACAAAT
GTTAGACAGTCGTAGCGGTGATCAAGGTGGTGGCTGGAACCAAACACCAACCGACTACAATCAAGACGGCTACACCGACA
GCTATGATCAAAATAACAACGTCAACGGAGGCAACGCAACCAGACCTCGACCAACCCCAAAACCTGCGGCTCAAGCAGAA
CCACCGATGGATAATTTTGATGATGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

88.333

100

0.924
  ssb Vibrio cholerae strain A1552

51.412

100

0.529
  ssb Neisseria gonorrhoeae MS11

42.938

100

0.442
  ssb Neisseria meningitidis MC58

41.618

100

0.419