Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J1G53_RS00350 Genome accession   NZ_CP071490
Coordinates   78821..79948 (-) Length   375 a.a.
NCBI ID   WP_207342510.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1808     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 73821..84948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G53_RS00335 (J1G53_00335) - 76158..76946 (-) 789 WP_207342509.1 heme ABC transporter ATP-binding protein -
  J1G53_RS00340 (J1G53_00340) - 76946..77932 (-) 987 WP_016528599.1 FecCD family ABC transporter permease -
  J1G53_RS00345 (J1G53_00345) - 77932..78768 (-) 837 WP_010787337.1 heme/hemin ABC transporter substrate-binding protein -
  J1G53_RS00350 (J1G53_00350) dprA 78821..79948 (-) 1128 WP_207342510.1 DNA-processing protein DprA Machinery gene
  J1G53_RS00355 (J1G53_00355) def 80284..80796 (+) 513 WP_005712670.1 peptide deformylase -
  J1G53_RS00360 (J1G53_00360) rfaD 80808..81734 (+) 927 WP_021110191.1 ADP-glyceromanno-heptose 6-epimerase -
  J1G53_RS00365 (J1G53_00365) - 81826..81969 (+) 144 WP_005712666.1 hypothetical protein -
  J1G53_RS00370 (J1G53_00370) - 81950..82234 (+) 285 WP_016528596.1 hypothetical protein -
  J1G53_RS00375 (J1G53_00375) - 82382..82522 (+) 141 WP_157686074.1 hypothetical protein -
  J1G53_RS00380 (J1G53_00380) - 83038..83196 (-) 159 WP_010787342.1 hypothetical protein -
  J1G53_RS00385 (J1G53_00385) - 83417..83812 (-) 396 WP_016527749.1 helix-turn-helix domain-containing protein -
  J1G53_RS00390 (J1G53_00390) - 83840..84109 (-) 270 WP_010787344.1 type II toxin-antitoxin system RelE family toxin -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 41752.79 Da        Isoelectric Point: 5.4030

>NTDB_id=545629 J1G53_RS00350 WP_207342510.1 78821..79948(-) (dprA) [Glaesserella parasuis strain GHP1808]
MTHLTKLLALLQVPQLGAQRIGRLLSEVDFGEFCQYNKTALKQMGWNERQIQRWFNPEHKWIDQALQWAEQDQQQILTLF
DEDYPFLLKQISTAPPVLFVRGNVESLSLPQIAIVGSRDYSHYGEHWAGHFSAELVKHQLAVTSGLAIGIDGFCHQRAVN
ENGITIAVLGSGLDQVYPARHKKLAEQIVDTSGALVSEFFPSQPPIAENFPRRNRIISGLSLGTLVIEATVNSGSLITAR
YALEQGREVFALPNAVQNPYSEGCHKLIKEGALLVENIDDILEAIVWQRQSVHIQPSLFDTKPKQAVKSEPKFAKNLPEL
TACQQQLFEQISLEPISIDDLAKATDMAVETALIELLNLELLGVVKQVSGGYVIT

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=545629 J1G53_RS00350 WP_207342510.1 78821..79948(-) (dprA) [Glaesserella parasuis strain GHP1808]
ATGACACATCTCACAAAATTATTAGCCCTGTTACAAGTGCCACAGCTTGGCGCGCAACGTATCGGGCGGTTACTCTCGGA
AGTGGACTTTGGCGAATTTTGTCAATATAACAAAACCGCATTAAAGCAAATGGGCTGGAATGAACGGCAAATTCAGCGTT
GGTTTAATCCTGAGCATAAATGGATTGATCAGGCGTTACAATGGGCAGAACAGGATCAGCAACAGATTTTAACCTTATTT
GACGAAGATTATCCTTTTTTATTGAAGCAGATCAGTACTGCTCCCCCTGTGCTTTTTGTGCGGGGGAATGTTGAAAGTTT
ATCGTTACCGCAGATAGCCATCGTTGGCAGTCGAGATTATTCCCACTATGGCGAACACTGGGCTGGGCATTTTTCGGCGG
AATTAGTGAAACATCAACTTGCTGTCACTAGTGGCTTAGCCATAGGCATAGACGGATTTTGTCATCAGCGTGCGGTCAAT
GAAAACGGGATTACTATTGCGGTTTTAGGCAGTGGTTTAGACCAAGTTTACCCTGCTCGCCACAAAAAACTTGCTGAACA
AATCGTTGATACAAGCGGTGCATTAGTGTCGGAATTTTTCCCTAGCCAGCCACCGATTGCTGAAAATTTCCCTAGACGAA
ATCGCATCATCAGCGGATTATCTCTCGGCACATTGGTTATTGAAGCCACGGTGAACAGTGGCTCGCTCATCACTGCCCGT
TATGCGTTAGAGCAAGGGAGAGAAGTCTTTGCATTGCCGAACGCAGTTCAAAACCCATATAGCGAAGGGTGCCATAAATT
GATTAAAGAAGGGGCATTACTGGTTGAAAATATTGATGACATTTTAGAAGCGATTGTGTGGCAACGGCAATCAGTGCATA
TTCAACCAAGTCTATTTGATACGAAACCTAAACAAGCGGTGAAATCCGAACCCAAATTTGCAAAAAATCTACCTGAACTG
ACCGCTTGTCAGCAACAATTGTTTGAACAGATTAGCCTTGAGCCGATCAGCATTGATGATCTTGCCAAAGCGACGGATAT
GGCGGTAGAAACCGCATTGATTGAGCTGCTGAATTTGGAGTTGTTGGGTGTTGTGAAGCAGGTGAGTGGGGGGTATGTAA
TCACTTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(313-371)

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

97.6

100

0.976
  dprA Haemophilus influenzae Rd KW20

52.941

90.667

0.48
  dprA Vibrio campbellii strain DS40M4

46.649

99.467

0.464
  dprA Vibrio cholerae strain A1552

43.617

100

0.437
  dprA Legionella pneumophila strain ERS1305867

38.889

100

0.392