Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J0663_RS19945 Genome accession   NZ_CP071454
Coordinates   4085902..4086411 (+) Length   169 a.a.
NCBI ID   WP_207242091.1    Uniprot ID   A0A9Q3M5J8
Organism   Rhizobium lentis strain BLR27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4080902..4091411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0663_RS19930 (J0663_19930) - 4081408..4082214 (-) 807 WP_207242088.1 DUF72 domain-containing protein -
  J0663_RS19935 (J0663_19935) - 4082238..4082699 (-) 462 WP_207242089.1 GNAT family N-acetyltransferase -
  J0663_RS19940 (J0663_19940) uvrA 4082696..4085617 (-) 2922 WP_207242090.1 excinuclease ABC subunit UvrA -
  J0663_RS19945 (J0663_19945) ssb 4085902..4086411 (+) 510 WP_207242091.1 single-stranded DNA-binding protein Machinery gene
  J0663_RS19950 (J0663_19950) - 4086535..4087182 (-) 648 WP_207242092.1 MarC family protein -
  J0663_RS19955 (J0663_19955) gyrA 4087421..4090219 (+) 2799 WP_207242093.1 DNA gyrase subunit A -
  J0663_RS19960 (J0663_19960) - 4090182..4090373 (+) 192 WP_207242094.1 hypothetical protein -
  J0663_RS31635 - 4090423..4090557 (-) 135 WP_258156729.1 hypothetical protein -
  J0663_RS19965 (J0663_19965) - 4090593..4090748 (-) 156 WP_003539654.1 hypothetical protein -
  J0663_RS31740 (J0663_19970) - 4090891..4091170 (-) 280 Protein_3965 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18243.86 Da        Isoelectric Point: 5.3093

>NTDB_id=545426 J0663_RS19945 WP_207242091.1 4085902..4086411(+) (ssb) [Rhizobium lentis strain BLR27]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYV
EGQLQTRKWQDQQGQDRYSTEVVLQGFNSTLTMLDGRGDGGGASSGFGGGRGSSNDYGDDYGAPSSSSSSSRGGGGGNFS
RDLDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=545426 J0663_RS19945 WP_207242091.1 4085902..4086411(+) (ssb) [Rhizobium lentis strain BLR27]
ATGGCTGGTAGCGTGAACAAGGTAATTCTGGTTGGAAACGTGGGTGCCGACCCCGAAATCCGCCGCACTCAGGACGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACCTGGCGTGACCGCAATTCCGGTGAACGTCGCGAAAAGACCGAGT
GGCACACGGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATGTC
GAAGGCCAACTGCAGACCCGCAAGTGGCAGGATCAGCAGGGCCAGGACCGTTACTCGACGGAAGTGGTGCTGCAGGGCTT
CAATTCGACGCTAACCATGCTCGATGGCCGCGGCGATGGCGGTGGCGCGAGCTCCGGCTTCGGCGGCGGCCGCGGCAGCA
GCAATGATTACGGCGACGACTACGGCGCCCCGTCATCCTCCTCCTCGTCGAGCCGCGGCGGTGGCGGCGGCAACTTCTCG
CGCGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.263

100

0.509
  ssb Vibrio cholerae strain A1552

46.821

100

0.479
  ssb Neisseria meningitidis MC58

35.754

100

0.379
  ssb Neisseria gonorrhoeae MS11

35.754

100

0.379