Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J0664_RS10060 Genome accession   NZ_CP071399
Coordinates   2056983..2057492 (-) Length   169 a.a.
NCBI ID   WP_138389200.1    Uniprot ID   -
Organism   Rhizobium leguminosarum strain OyaliB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2051983..2062492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0664_RS36655 (J0664_10040) - 2052240..2052518 (+) 279 WP_207158478.1 hypothetical protein -
  J0664_RS10045 (J0664_10045) - 2052653..2052808 (+) 156 WP_003539654.1 hypothetical protein -
  J0664_RS36545 - 2052845..2052979 (+) 135 WP_261327745.1 hypothetical protein -
  J0664_RS10050 (J0664_10050) gyrA 2053162..2055999 (-) 2838 WP_207158479.1 DNA gyrase subunit A -
  J0664_RS10055 (J0664_10055) - 2056236..2056883 (+) 648 WP_012757442.1 MarC family protein -
  J0664_RS10060 (J0664_10060) ssb 2056983..2057492 (-) 510 WP_138389200.1 single-stranded DNA-binding protein Machinery gene
  J0664_RS10065 (J0664_10065) uvrA 2057775..2060696 (+) 2922 WP_207158480.1 excinuclease ABC subunit UvrA -
  J0664_RS10070 (J0664_10070) - 2060693..2061155 (+) 463 Protein_2013 GNAT family N-acetyltransferase -
  J0664_RS10075 (J0664_10075) - 2061180..2061986 (+) 807 WP_207158481.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18110.85 Da        Isoelectric Point: 5.3175

>NTDB_id=545226 J0664_RS10060 WP_138389200.1 2056983..2057492(-) (ssb) [Rhizobium leguminosarum strain OyaliB]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASGGRGSAGGGNDYGDDYGAPAPASSPSRGGGSGGNFS
RDLDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=545226 J0664_RS10060 WP_138389200.1 2056983..2057492(-) (ssb) [Rhizobium leguminosarum strain OyaliB]
ATGGCTGGTAGCGTGAATAAGGTAATTCTGATTGGAAACGTCGGTGCAGACCCGGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACTTCGGAGACCTGGCGCGACCGAAATTCCGGCGAGCGCCGTGAAAAGACCGAAT
GGCACACCGTCGTCGTCTTCAACGAGGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGTTGCAGACCCGTAAATGGCAGGACCAGCAGGGCCAGGATCGCTACAGCACGGAAGTGGTGCTGCAGGGTTT
CGGTTCGACGCTGACGATGCTCGACGGCCGCGGTGAAGGCGGCGGCGCGAGTGGCGGCCGTGGCAGTGCCGGTGGCGGCA
ACGATTATGGCGACGATTACGGCGCCCCGGCTCCCGCTTCATCGCCGAGCCGCGGCGGTGGCAGCGGCGGCAACTTCTCG
CGGGATCTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.289

100

0.515
  ssb Glaesserella parasuis strain SC1401

43.979

100

0.497
  ssb Neisseria meningitidis MC58

39.011

100

0.42
  ssb Neisseria gonorrhoeae MS11

38.547

100

0.408