Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J1F62_RS25845 Genome accession   NZ_CP071393
Coordinates   5506255..5506782 (-) Length   175 a.a.
NCBI ID   WP_004097799.1    Uniprot ID   A0A0J2K732
Organism   Klebsiella michiganensis strain Kmfe267     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5501255..5511782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1F62_RS25835 (J1F62_25835) - 5501653..5503914 (-) 2262 WP_025107697.1 TonB-dependent siderophore receptor -
  J1F62_RS25840 (J1F62_25840) - 5504510..5506168 (+) 1659 WP_207171987.1 lytic transglycosylase F -
  J1F62_RS25845 (J1F62_25845) ssb 5506255..5506782 (-) 528 WP_004097799.1 single-stranded DNA-binding protein SSB1 Machinery gene
  J1F62_RS25850 (J1F62_25850) uvrA 5507029..5509854 (+) 2826 WP_207171989.1 excinuclease ABC subunit UvrA -
  J1F62_RS25855 (J1F62_25855) - 5509987..5510397 (+) 411 WP_102803507.1 hypothetical protein -
  J1F62_RS25860 (J1F62_25860) - 5510400..5510717 (+) 318 WP_102803506.1 hypothetical protein -
  J1F62_RS25865 (J1F62_25865) - 5510720..5511073 (-) 354 WP_032747498.1 MmcQ/YjbR family DNA-binding protein -
  J1F62_RS25870 (J1F62_25870) - 5511076..5511492 (-) 417 WP_048262067.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18776.81 Da        Isoelectric Point: 5.2456

>NTDB_id=545218 J1F62_RS25845 WP_004097799.1 5506255..5506782(-) (ssb) [Klebsiella michiganensis strain Kmfe267]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQQGAGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=545218 J1F62_RS25845 WP_004097799.1 5506255..5506782(-) (ssb) [Klebsiella michiganensis strain Kmfe267]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCGGCGAGTATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGACTGACCAATCCGGTCAGGAAAAATACACCACCGAGGTTGTCGTTAACGTTGG
CGGCACGATGCAAATGCTCGGCGGTCGTCAGCAGGGCGCGGGCGCCCCGGCAGGCGGTGGTCAGCAGCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGGCGCCAGCTGCC
CCTTCCAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J2K732

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.771
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.611
  ssb Neisseria meningitidis MC58

48.045

100

0.491
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.491