Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   LO013_RS03960 Genome accession   NZ_CP087325
Coordinates   810556..811230 (+) Length   224 a.a.
NCBI ID   WP_002069293.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC073     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 805556..816230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO013_RS03945 - 805586..806833 (+) 1248 WP_004739776.1 MFS transporter -
  LO013_RS03950 - 807379..808710 (+) 1332 WP_156190877.1 DcaP family trimeric outer membrane transporter -
  LO013_RS03955 - 808892..810541 (+) 1650 WP_031946555.1 phosphoethanolamine transferase -
  LO013_RS03960 ciaR 810556..811230 (+) 675 WP_002069293.1 DNA-binding response regulator PmrA Regulator
  LO013_RS03965 - 811256..812590 (+) 1335 WP_004739768.1 two-component system sensor histidine kinase PmrB -
  LO013_RS03970 - 812591..813289 (-) 699 WP_000184466.1 phosphatase PAP2 family protein -
  LO013_RS03975 - 813442..814629 (-) 1188 WP_001181775.1 ammonium transporter -
  LO013_RS03980 - 814932..815815 (-) 884 Protein_759 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25536.42 Da        Isoelectric Point: 5.3246

>NTDB_id=545169 LO013_RS03960 WP_002069293.1 810556..811230(+) (ciaR) [Acinetobacter baumannii strain OC073]
MTKILMIEDDFMIAESTTTLLQYHQFEVEWVNNGLDGLAQLAKTKFDLILLDLGLPMMDGMQVLKQIRQRAATPVLIISA
RDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSGVEAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREW
AILIPLMTHPNKIFSKANLEDKLYDFDSDVTSNTIEVYVHHLRAKLGKDFIRTIRGLGYRLGQS

Nucleotide


Download         Length: 675 bp        

>NTDB_id=545169 LO013_RS03960 WP_002069293.1 810556..811230(+) (ciaR) [Acinetobacter baumannii strain OC073]
ATGACAAAAATCTTGATGATTGAAGATGATTTTATGATTGCAGAATCAACGACTACGTTGCTGCAATATCATCAATTTGA
GGTGGAATGGGTCAATAACGGTTTAGATGGTTTGGCCCAATTGGCGAAGACTAAATTTGATCTTATTCTTTTGGATTTAG
GATTGCCTATGATGGATGGTATGCAAGTTTTAAAGCAGATCCGTCAAAGAGCAGCAACACCAGTATTAATTATTTCTGCT
CGAGATCAATTACAAAACCGTGTCGATGGTTTAAATTTGGGTGCAGATGATTATTTAATTAAACCTTATGAGTTTGATGA
GTTGCTTGCCCGTATTCATGCATTACTACGCCGTAGTGGAGTAGAAGCTCAACTTGCGAGTCAAGATCAACTATTAGAAA
GTGGTGATCTGGTTTTAAATGTTGAACAGCATATTGCGACGTTTAAAGGCCAACGCATTGATTTATCAAATCGTGAATGG
GCAATCTTAATTCCACTTATGACTCACCCAAATAAAATCTTTTCTAAAGCCAACTTAGAAGATAAGTTATATGATTTTGA
TAGTGATGTGACCAGTAATACTATTGAAGTATATGTTCACCATTTAAGAGCGAAGCTGGGTAAAGATTTTATCCGAACCA
TCCGAGGACTGGGCTACCGTTTGGGGCAATCATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-221)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.496

100

0.388
  ciaR Streptococcus pneumoniae D39

38.496

100

0.388
  ciaR Streptococcus pneumoniae R6

38.496

100

0.388
  ciaR Streptococcus pneumoniae TIGR4

38.496

100

0.388
  ciaR Streptococcus mutans UA159

37.445

100

0.379
  micA Streptococcus pneumoniae Cp1015

35.965

100

0.366