Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JZ655_RS12340 Genome accession   NZ_CP071383
Coordinates   2543051..2543584 (+) Length   177 a.a.
NCBI ID   WP_207291927.1    Uniprot ID   -
Organism   Leclercia pneumoniae strain 49125     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2529506..2547998 2543051..2543584 within 0


Gene organization within MGE regions


Location: 2529506..2547998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZ655_RS12220 (JZ655_12220) - 2529506..2529895 (-) 390 WP_207291909.1 S24 family peptidase -
  JZ655_RS12225 (JZ655_12225) - 2530143..2531138 (+) 996 WP_207291910.1 acyltransferase family protein -
  JZ655_RS12230 (JZ655_12230) - 2531171..2532076 (-) 906 WP_207291911.1 GDSL-type esterase/lipase family protein -
  JZ655_RS12240 (JZ655_12240) - 2533388..2534677 (-) 1290 WP_242637266.1 replicative DNA helicase -
  JZ655_RS21410 - 2534674..2535774 (-) 1101 WP_242637267.1 DNA replication protein -
  JZ655_RS12250 (JZ655_12250) - 2535821..2535985 (-) 165 WP_207291912.1 hypothetical protein -
  JZ655_RS12255 (JZ655_12255) - 2536027..2536311 (-) 285 WP_023306037.1 CII family transcriptional regulator -
  JZ655_RS12260 (JZ655_12260) - 2536398..2536586 (-) 189 WP_023306036.1 Cro/CI family transcriptional regulator -
  JZ655_RS12265 (JZ655_12265) - 2536690..2537400 (+) 711 WP_207291913.1 S24 family peptidase -
  JZ655_RS12270 (JZ655_12270) - 2537462..2537713 (+) 252 WP_207291914.1 hypothetical protein -
  JZ655_RS12275 (JZ655_12275) - 2537710..2538225 (+) 516 WP_207291915.1 hypothetical protein -
  JZ655_RS21550 (JZ655_12280) - 2538363..2538623 (+) 261 WP_207291916.1 hypothetical protein -
  JZ655_RS12285 (JZ655_12285) - 2539349..2539516 (+) 168 WP_207291917.1 hypothetical protein -
  JZ655_RS12290 (JZ655_12290) - 2539725..2540045 (+) 321 WP_207291918.1 hypothetical protein -
  JZ655_RS12295 (JZ655_12295) - 2540099..2540290 (+) 192 WP_207291919.1 hypothetical protein -
  JZ655_RS12300 (JZ655_12300) - 2540346..2540612 (+) 267 WP_207291920.1 hypothetical protein -
  JZ655_RS12305 (JZ655_12305) - 2540757..2541095 (+) 339 WP_207291921.1 hypothetical protein -
  JZ655_RS12310 (JZ655_12310) - 2541092..2541250 (+) 159 WP_177205267.1 hypothetical protein -
  JZ655_RS12315 (JZ655_12315) - 2541247..2541453 (+) 207 WP_207291922.1 cell division protein FtsZ -
  JZ655_RS12320 (JZ655_12320) - 2541464..2541898 (+) 435 WP_207291923.1 zinc-finger-containing protein -
  JZ655_RS12325 (JZ655_12325) - 2541976..2542173 (+) 198 WP_207291924.1 thioredoxin reductase -
  JZ655_RS12330 (JZ655_12330) - 2542170..2542328 (+) 159 WP_207291925.1 hypothetical protein -
  JZ655_RS12335 (JZ655_12335) - 2542325..2543050 (+) 726 WP_207291926.1 Rad52/Rad22 family DNA repair protein -
  JZ655_RS12340 (JZ655_12340) ssb 2543051..2543584 (+) 534 WP_207291927.1 single-stranded DNA-binding protein Machinery gene
  JZ655_RS12345 (JZ655_12345) - 2543593..2544141 (+) 549 WP_207291928.1 3'-5' exonuclease -
  JZ655_RS12350 (JZ655_12350) - 2544163..2544492 (+) 330 WP_207291929.1 hypothetical protein -
  JZ655_RS12355 (JZ655_12355) - 2544492..2544650 (+) 159 WP_207291930.1 DUF1317 family protein -
  JZ655_RS12360 (JZ655_12360) - 2544647..2545198 (+) 552 WP_207291931.1 phage N-6-adenine-methyltransferase -
  JZ655_RS12365 (JZ655_12365) - 2545195..2545419 (+) 225 WP_242637269.1 hypothetical protein -
  JZ655_RS12370 (JZ655_12370) - 2545422..2545637 (+) 216 WP_207291932.1 TraR/DksA family transcriptional regulator -
  JZ655_RS12375 (JZ655_12375) - 2545728..2545997 (+) 270 WP_207291933.1 hypothetical protein -
  JZ655_RS12380 (JZ655_12380) - 2546086..2546712 (+) 627 WP_207291934.1 Eac protein -
  JZ655_RS12385 (JZ655_12385) - 2546949..2547998 (+) 1050 WP_207291935.1 site-specific integrase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19153.32 Da        Isoelectric Point: 7.3174

>NTDB_id=545136 JZ655_RS12340 WP_207291927.1 2543051..2543584(+) (ssb) [Leclercia pneumoniae strain 49125]
MASKGVNKVILVGNLGQDPEVRYLPSGGAVANITLATSESWRDKATGEQKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGTDKYTTEVLVNVGGVMQMLGGRQAGAQAGSGQQQSGNSSGNGQPRQQQRSASAQSNEPPMDFDDDI
PFAPVTLPFPRHTIHAI

Nucleotide


Download         Length: 534 bp        

>NTDB_id=545136 JZ655_RS12340 WP_207291927.1 2543051..2543584(+) (ssb) [Leclercia pneumoniae strain 49125]
ATGGCAAGTAAAGGCGTTAACAAAGTAATCCTCGTTGGCAACCTCGGGCAGGATCCTGAGGTTCGTTATCTGCCAAGTGG
TGGAGCGGTAGCAAATATCACGCTGGCGACCTCGGAGTCGTGGCGAGATAAGGCGACCGGCGAGCAGAAAGAGCAGACTG
AATGGCACCGGGTTGTGCTGTTCGGAAAGCTGGCAGAAGTGGCTGGCGAATATCTCCGCAAGGGCTCTCAGGTTTATATC
GAAGGCCAGTTACGTACCCGGAAATGGACGGATCAGTCAGGCACTGATAAGTACACCACGGAGGTGCTGGTAAACGTCGG
CGGGGTCATGCAGATGCTCGGTGGACGGCAGGCAGGCGCACAGGCGGGAAGTGGTCAGCAGCAATCAGGTAACTCTTCCG
GTAACGGGCAACCTCGCCAGCAACAGCGGTCAGCATCTGCTCAGTCAAATGAGCCACCTATGGATTTCGACGACGATATT
CCGTTTGCTCCCGTAACCCTTCCCTTCCCTCGCCACACTATTCACGCCATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.362

100

0.684
  ssb Glaesserella parasuis strain SC1401

51.381

100

0.525
  ssb Neisseria meningitidis MC58

41.477

99.435

0.412
  ssb Neisseria gonorrhoeae MS11

41.477

99.435

0.412