Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J0O73_RS01650 Genome accession   NZ_CP071375
Coordinates   359224..359760 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain E105     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 354224..364760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0O73_RS01630 (J0O73_01630) aphA 354512..355225 (+) 714 Protein_301 acid phosphatase AphA -
  J0O73_RS01635 (J0O73_01635) yjbQ 355336..355752 (+) 417 WP_089637884.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  J0O73_RS01640 (J0O73_01640) yjbR 355756..356112 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  J0O73_RS01645 (J0O73_01645) uvrA 356147..358969 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  J0O73_RS01650 (J0O73_01650) ssb 359224..359760 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  J0O73_RS01655 (J0O73_01655) yjcB 359859..360140 (-) 282 WP_001295689.1 YjcB family protein -
  J0O73_RS01660 (J0O73_01660) pdeC 360569..362155 (+) 1587 WP_053883845.1 c-di-GMP phosphodiesterase PdeC -
  J0O73_RS01665 (J0O73_01665) soxS 362158..362481 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  J0O73_RS01670 (J0O73_01670) soxR 362567..363031 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=545077 J0O73_RS01650 WP_000168305.1 359224..359760(+) (ssb) [Escherichia coli strain E105]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=545077 J0O73_RS01650 WP_000168305.1 359224..359760(+) (ssb) [Escherichia coli strain E105]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACTGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGCGGCGCTCCGGCAGGTGGTAATATCGGTGGCGGTCAGCCACAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCC
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489