Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FH974_RS01480 Genome accession   NZ_CP071325
Coordinates   300057..300605 (+) Length   182 a.a.
NCBI ID   WP_207103448.1    Uniprot ID   -
Organism   Photobacterium ganghwense strain C2.2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 295057..305605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH974_RS01470 (FH974_01470) - 295088..296857 (-) 1770 WP_207103446.1 Wzy polymerase domain-containing protein -
  FH974_RS01475 (FH974_01475) uvrA 296945..299788 (-) 2844 WP_207103447.1 excinuclease ABC subunit UvrA -
  FH974_RS01480 (FH974_01480) ssb 300057..300605 (+) 549 WP_207103448.1 single-stranded DNA-binding protein Machinery gene
  FH974_RS01485 (FH974_01485) - 300743..301942 (-) 1200 WP_207103449.1 putative manganese transporter -
  FH974_RS01490 (FH974_01490) - 302280..303164 (-) 885 WP_047887022.1 LysR family transcriptional regulator -
  FH974_RS01495 (FH974_01495) csrD 303525..305468 (+) 1944 WP_207103450.1 RNase E specificity factor CsrD -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20009.15 Da        Isoelectric Point: 4.9269

>NTDB_id=545045 FH974_RS01480 WP_207103448.1 300057..300605(+) (ssb) [Photobacterium ganghwense strain C2.2]
MASRGVNKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKNTGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRFSTEIVVQGYNGIMQMLGGRQGGQGMGAPMGGQQQQGGWGQPQQPAAAPQQQSYAPQQQSAPQ
QQPASQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=545045 FH974_RS01480 WP_207103448.1 300057..300605(+) (ssb) [Photobacterium ganghwense strain C2.2]
ATGGCCAGTCGTGGCGTAAACAAGGTTATCCTGGTTGGTAACTTGGGTAATGATCCGGAAATCCGTTACATGCCGAGTGG
TGGTGCAGTTGCAAATATTACCGTTGCCACCTCTGAGACTTGGCGTGACAAAAACACCGGCGAGCAGCGTGAAAAAACAG
AATGGCACCGTGTAGTGCTGTTCGGTAAGCTGGCGGAAGTGGCGGGTGAATACCTGCGCAAAGGTTCGCAAGTTTACATT
GAAGGTCAGCTGCAAACGCGTAAATGGCAAGACCAGAGCGGCCAGGATCGCTTCTCGACTGAAATCGTCGTGCAGGGTTA
CAACGGCATTATGCAAATGCTGGGTGGCCGTCAGGGTGGCCAGGGTATGGGTGCCCCTATGGGTGGTCAGCAGCAGCAAG
GTGGTTGGGGACAGCCGCAGCAGCCAGCTGCCGCACCACAGCAGCAGAGCTACGCGCCTCAGCAACAGTCTGCCCCACAA
CAGCAGCCTGCGTCTCAGCCTCAGTACAATGAGCCGCCAATGGATTTCGATGACGATATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.435

100

0.813
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.577
  ssb Neisseria gonorrhoeae MS11

49.727

100

0.5
  ssb Neisseria meningitidis MC58

49.18

100

0.495