Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J0W34_RS18090 Genome accession   NZ_CP071321
Coordinates   3916303..3916800 (-) Length   165 a.a.
NCBI ID   WP_227816653.1    Uniprot ID   -
Organism   Nitrogeniibacter aestuarii strain H1-1-2A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3911303..3921800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W34_RS18075 - 3912093..3913775 (-) 1683 WP_230969708.1 ABC transporter ATP-binding protein -
  J0W34_RS18080 - 3913775..3914731 (-) 957 WP_230969709.1 molybdopterin-guanine dinucleotide biosynthesis protein MobB -
  J0W34_RS18085 - 3915221..3916237 (+) 1017 WP_230969710.1 NAD(P)-dependent alcohol dehydrogenase -
  J0W34_RS18090 ssb 3916303..3916800 (-) 498 WP_227816653.1 single-stranded DNA-binding protein Machinery gene
  J0W34_RS18095 - 3916801..3918138 (-) 1338 WP_230969711.1 MFS transporter -
  J0W34_RS18100 uvrA 3918311..3921139 (+) 2829 WP_230969712.1 excinuclease ABC subunit UvrA -
  J0W34_RS18105 - 3921295..3921606 (+) 312 WP_230969713.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17792.64 Da        Isoelectric Point: 5.2939

>NTDB_id=545016 J0W34_RS18090 WP_227816653.1 3916303..3916800(-) (ssb) [Nitrogeniibacter aestuarii strain H1-1-2A]
MASVNKVIIVGNLGRDPEIRYAPSGDAICNVSIATTDTWRDKQTGEKRENTEWHRVVFFGKLAEIAGQYLKKGRPVYVEG
SLRTRKWQDQNGQDRYTTEIRANEMQMLGGRGEGGDVPMGGGDDYGAPAQSSRPAPRQAPAQGGSAPAPSSSGGGFGDFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=545016 J0W34_RS18090 WP_227816653.1 3916303..3916800(-) (ssb) [Nitrogeniibacter aestuarii strain H1-1-2A]
ATGGCATCGGTCAACAAGGTCATCATCGTCGGCAACCTGGGCCGCGATCCTGAAATCCGCTACGCCCCGTCGGGTGACGC
GATCTGCAATGTGAGCATCGCCACCACCGATACCTGGCGCGACAAGCAGACCGGCGAGAAGCGTGAGAACACCGAGTGGC
ACCGCGTGGTCTTCTTCGGCAAGCTGGCCGAGATCGCGGGGCAGTATCTCAAGAAAGGTCGTCCGGTGTATGTGGAAGGC
AGCCTGCGCACGCGCAAGTGGCAGGATCAGAACGGTCAGGACCGCTACACCACCGAAATTCGCGCCAACGAGATGCAGAT
GCTCGGTGGCCGCGGTGAAGGTGGCGACGTGCCCATGGGCGGTGGTGATGATTACGGTGCGCCTGCCCAGAGCAGCCGCC
CGGCGCCGCGCCAGGCGCCTGCGCAGGGCGGTAGTGCGCCGGCCCCGTCGTCTTCTGGCGGTGGTTTTGGTGATTTCGAC
GACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.618

100

0.6
  ssb Glaesserella parasuis strain SC1401

51.596

100

0.588
  ssb Neisseria gonorrhoeae MS11

50.857

100

0.539
  ssb Neisseria meningitidis MC58

49.425

100

0.521