Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LO007_RS10335 Genome accession   NZ_CP087312
Coordinates   2191586..2192692 (-) Length   368 a.a.
NCBI ID   WP_001187341.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC059     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2186586..2197692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO007_RS10305 cydB 2187733..2188878 (+) 1146 WP_031999823.1 cytochrome d ubiquinol oxidase subunit II -
  LO007_RS10310 cydX 2188892..2188993 (+) 102 WP_000270276.1 cytochrome bd-I oxidase subunit CydX -
  LO007_RS10315 - 2188994..2189293 (+) 300 WP_085916945.1 cyd operon YbgE family protein -
  LO007_RS10320 - 2189306..2189830 (-) 525 WP_002126108.1 GNAT family N-acetyltransferase -
  LO007_RS10325 - 2189903..2190574 (-) 672 WP_000175347.1 DUF2057 domain-containing protein -
  LO007_RS10330 - 2190800..2191396 (-) 597 WP_000102943.1 nitroreductase family protein -
  LO007_RS10335 pilA 2191586..2192692 (-) 1107 WP_001187341.1 signal recognition particle-docking protein FtsY Machinery gene
  LO007_RS10340 - 2192800..2193126 (-) 327 WP_000955082.1 hypothetical protein -
  LO007_RS10345 - 2193227..2193586 (-) 360 WP_000185571.1 hypothetical protein -
  LO007_RS10350 - 2193802..2194035 (+) 234 WP_000616034.1 hypothetical protein -
  LO007_RS10355 - 2194470..2194844 (+) 375 WP_001087274.1 DUF2750 domain-containing protein -
  LO007_RS10360 - 2194985..2195416 (+) 432 WP_000156920.1 CBS domain-containing protein -
  LO007_RS10365 - 2195467..2196675 (-) 1209 WP_000129945.1 aspartate aminotransferase family protein -
  LO007_RS10370 grxD 2196903..2197244 (+) 342 WP_000138830.1 Grx4 family monothiol glutaredoxin -
  LO007_RS10375 - 2197291..2197614 (-) 324 WP_225513898.1 hypothetical protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39905.69 Da        Isoelectric Point: 4.9837

>NTDB_id=544955 LO007_RS10335 WP_001187341.1 2191586..2192692(-) (pilA) [Acinetobacter baumannii strain OC059]
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFT
DGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDP
NKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFE
SARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLD
GTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETDK

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=544955 LO007_RS10335 WP_001187341.1 2191586..2192692(-) (pilA) [Acinetobacter baumannii strain OC059]
ATGCAACAACAATCGAATATGCAAAATAAATTCTTGATAGATGCTGAGATCGGGGATGACGATGTCACATTGCCTAATTT
ACCTGCTATCGATGTTCCTATCGTTGAGTCACCTGTTAAGCAAGAAGTAAAAGCTGAAGAAGTTGTCGAGGCTGCACCTT
CTACAGAACCTGAGCAACCAAAATCTGGTTTCTTTGGACGAATGAAAGAAGGCTTGAGCAAAACTCGTCGTAATTTCACC
GATGGTATGGTTAATATCTTAATTGGTGGGAAAGAAATTGATGATGAGTTGCTTGAAGAAGTCGAAGAGCAATTATTAGT
TGCAGATATTGGTGTTGATGCAACAAAAACGATTATTACCAACTTAACTGAACGTACTGCTCGTGGTGATTTGATCTATT
CACATTCACTTTATAAAGCCTTGCAAGAAGAGTTGGTTGCTTTGCTTGCTCCACGCGTGAAGCCTTTACATATTGACCCT
AATAAATCACCTTATGTGATTTTAATGGTTGGGGTAAATGGTGTTGGAAAAACAACAACAATTGGTAAGTTGGCGAAGCG
TTTACAAGGTGAAGGCAAAAAAGTGATGTTGGCGGCAGGTGATACATTCCGTGCTGCTGCTACTGAACAATTGCAAATCT
GGGGTGAGCGTAACGATATTGCTGTTGTTGCTCAAGGTCATGGTGCCGATAGTGCATCAGTTATTTTTGATGCTTTTGAA
AGTGCGCGAGCTAAAGGTATTGATGTACTGATTGCAGATACTGCGGGCCGTTTGCATAACAAAAGTAATTTGATGGAAGA
GCTTAAGAAAGTTAAGCGTGTTATGCAAAAAATTGATGCAACAGCGCCTCATGAAATTATGTTGGTTGTAGATGCGGGTA
CTGGACAAAATGCAATCAACCAAGTACAAGAATTTGACCAGGCTGTCGGTTTAACAGGTATTACCATTACTAAGTTGGAT
GGTACAGCAAAAGGTGGAGTATTATTTAATATTGCTAGTCGTACTCATGTGCCAATTCGCTTCATTGGTGTGGGTGAAAA
AATTGATGATTTAAGACCATTCTCGGCGAAATCGTTTGTTGCAGCACTATTTGAAACTGATAAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(83-145)

SRP54-type protein, GTPase domain (SRP54)

(165-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.038

86.685

0.451