Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J0W33_RS06995 Genome accession   NZ_CP071319
Coordinates   1460699..1461265 (-) Length   188 a.a.
NCBI ID   WP_075175360.1    Uniprot ID   A0A6C0XYQ8
Organism   Acinetobacter indicus strain GXNN62X4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1431048..1460543 1460699..1461265 flank 156


Gene organization within MGE regions


Location: 1431048..1461265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W33_RS06855 (J0W33_06855) - 1431048..1432199 (-) 1152 WP_206896572.1 IS4-like element ISAbe18 family transposase -
  J0W33_RS06860 (J0W33_06860) - 1432580..1433296 (-) 717 WP_206897012.1 XRE family transcriptional regulator -
  J0W33_RS06870 (J0W33_06870) - 1435239..1435568 (+) 330 WP_004641881.1 four-helix bundle copper-binding protein -
  J0W33_RS06875 (J0W33_06875) - 1435697..1435990 (-) 294 Protein_1333 type II toxin-antitoxin system RelE family toxin -
  J0W33_RS06880 (J0W33_06880) - 1435980..1436225 (-) 246 WP_104988060.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  J0W33_RS06885 (J0W33_06885) - 1436405..1437349 (-) 945 WP_168397138.1 copper resistance protein B -
  J0W33_RS06890 (J0W33_06890) - 1437336..1437674 (-) 339 WP_004897649.1 hypothetical protein -
  J0W33_RS06895 (J0W33_06895) - 1437661..1439472 (-) 1812 WP_004733211.1 copper resistance system multicopper oxidase -
  J0W33_RS06900 (J0W33_06900) - 1440350..1441144 (+) 795 WP_016658412.1 MipA/OmpV family protein -
  J0W33_RS06905 (J0W33_06905) - 1441450..1442016 (-) 567 WP_000678311.1 recombinase family protein -
  J0W33_RS06910 (J0W33_06910) - 1442203..1443102 (-) 900 WP_177156119.1 cation diffusion facilitator family transporter -
  J0W33_RS06915 (J0W33_06915) - 1443189..1446329 (-) 3141 WP_096902762.1 efflux RND transporter permease subunit -
  J0W33_RS06920 (J0W33_06920) - 1446319..1447548 (-) 1230 WP_104472702.1 efflux RND transporter periplasmic adaptor subunit -
  J0W33_RS06925 (J0W33_06925) - 1447550..1448875 (-) 1326 WP_035269736.1 TolC family protein -
  J0W33_RS06930 (J0W33_06930) - 1448924..1449340 (-) 417 WP_227591103.1 cation efflux protein, CzcI-like -
  J0W33_RS06935 (J0W33_06935) - 1449627..1450717 (-) 1091 Protein_1345 IS3 family transposase -
  J0W33_RS06940 (J0W33_06940) - 1450784..1451005 (-) 222 WP_005180724.1 hypothetical protein -
  J0W33_RS06945 (J0W33_06945) - 1451029..1451244 (-) 216 Protein_1347 copper resistance protein B -
  J0W33_RS06950 (J0W33_06950) - 1451294..1451998 (-) 705 WP_001067784.1 IS6-like element IS1006 family transposase -
  J0W33_RS06955 (J0W33_06955) cadR 1452092..1452484 (-) 393 WP_000550240.1 Cd(II)/Pb(II)-responsive transcriptional regulator -
  J0W33_RS06960 (J0W33_06960) - 1452574..1453854 (+) 1281 WP_005237495.1 cation transporter -
  J0W33_RS06965 (J0W33_06965) - 1453918..1454620 (+) 703 Protein_1351 IS6-like element IS1006 family transposase -
  J0W33_RS06970 (J0W33_06970) - 1454844..1455029 (+) 186 WP_206897013.1 hypothetical protein -
  J0W33_RS06975 (J0W33_06975) - 1455232..1455648 (-) 417 WP_168542628.1 hypothetical protein -
  J0W33_RS14445 (J0W33_06980) - 1455650..1457775 (-) 2126 Protein_1354 integrase -
  J0W33_RS06985 (J0W33_06985) - 1457768..1459324 (-) 1557 WP_180006638.1 site-specific integrase -
  J0W33_RS06990 (J0W33_06990) - 1459317..1460543 (-) 1227 WP_180006639.1 tyrosine-type recombinase/integrase -
  J0W33_RS06995 (J0W33_06995) ssb 1460699..1461265 (-) 567 WP_075175360.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20670.41 Da        Isoelectric Point: 6.4819

>NTDB_id=544952 J0W33_RS06995 WP_075175360.1 1460699..1461265(-) (ssb) [Acinetobacter indicus strain GXNN62X4]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQSEQGDNGFSQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=544952 J0W33_RS06995 WP_075175360.1 1460699..1461265(-) (ssb) [Acinetobacter indicus strain GXNN62X4]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCCATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCATTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTGGTCGTCAGCAAAGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAAGCTCAAGGTGGTTTTAACAACAATAATGCCGGTGGTGGTTAT
GGCAACCAGGGTGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCTGCAGATTTGGATGATGACTTACC
GTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6C0XYQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.577

100

0.543
  ssb Vibrio cholerae strain A1552

43.939

100

0.463
  ssb Neisseria meningitidis MC58

38.421

100

0.388
  ssb Neisseria gonorrhoeae MS11

38.421

100

0.388