Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J0W32_RS06885 Genome accession   NZ_CP071317
Coordinates   1437892..1438458 (-) Length   188 a.a.
NCBI ID   WP_075175360.1    Uniprot ID   A0A6C0XYQ8
Organism   Acinetobacter indicus strain GXNN15X4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1432892..1443458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W32_RS06860 (J0W32_06860) - 1433055..1434353 (-) 1299 WP_034598019.1 FAD-dependent oxidoreductase -
  J0W32_RS06865 (J0W32_06865) - 1434787..1435662 (-) 876 WP_206862916.1 pirin family protein -
  J0W32_RS06870 (J0W32_06870) ahpC 1435862..1436425 (-) 564 WP_005180661.1 alkyl hydroperoxide reductase subunit C -
  J0W32_RS06875 (J0W32_06875) - 1436588..1437193 (-) 606 WP_168406593.1 TetR/AcrR family transcriptional regulator -
  J0W32_RS06880 (J0W32_06880) - 1437347..1437811 (+) 465 WP_168406594.1 hotdog fold domain-containing protein -
  J0W32_RS06885 (J0W32_06885) ssb 1437892..1438458 (-) 567 WP_075175360.1 single-stranded DNA-binding protein Machinery gene
  J0W32_RS06890 (J0W32_06890) - 1438510..1439874 (-) 1365 WP_075167305.1 MFS transporter -
  J0W32_RS06895 (J0W32_06895) - 1440027..1441109 (-) 1083 WP_005180731.1 DUF475 domain-containing protein -
  J0W32_RS06900 (J0W32_06900) tenA 1441377..1442048 (+) 672 WP_206862917.1 thiaminase II -
  J0W32_RS06905 (J0W32_06905) - 1442299..1442639 (-) 341 Protein_1335 GlpM family protein -
  J0W32_RS06910 (J0W32_06910) - 1442704..1443060 (-) 357 WP_171525390.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20670.41 Da        Isoelectric Point: 6.4819

>NTDB_id=544911 J0W32_RS06885 WP_075175360.1 1437892..1438458(-) (ssb) [Acinetobacter indicus strain GXNN15X4]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQSEQGDNGFSQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=544911 J0W32_RS06885 WP_075175360.1 1437892..1438458(-) (ssb) [Acinetobacter indicus strain GXNN15X4]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCCATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCATTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTGGTCGTCAGCAAAGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAAGCTCAAGGTGGTTTTAACAACAATAATGCTGGTGGTGGCTAT
GGCAACCAGGGCGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCGGCAGATTTGGATGATGATTTACC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6C0XYQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.577

100

0.543
  ssb Vibrio cholerae strain A1552

43.939

100

0.463
  ssb Neisseria meningitidis MC58

38.421

100

0.388
  ssb Neisseria gonorrhoeae MS11

38.421

100

0.388