Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | UC509_RS10915 | Genome accession | NC_019435 |
| Coordinates | 2159173..2159673 (-) | Length | 166 a.a. |
| NCBI ID | WP_011677241.1 | Uniprot ID | A0A0M2ZSZ2 |
| Organism | Lactococcus cremoris subsp. cremoris UC509.9 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2154173..2164673
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UC509_RS10890 (uc509_2164) | gnd | 2155298..2156203 (-) | 906 | WP_015082959.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| UC509_RS10895 (uc509_2165) | - | 2156572..2157420 (+) | 849 | WP_011677238.1 | MurR/RpiR family transcriptional regulator | - |
| UC509_RS10900 (uc509_2166) | - | 2157459..2157767 (+) | 309 | WP_011836103.1 | DUF960 domain-containing protein | - |
| UC509_RS10905 (uc509_2167) | - | 2157840..2158625 (-) | 786 | WP_021164832.1 | metallophosphoesterase | - |
| UC509_RS10910 (uc509_2168) | rpsR | 2158756..2159001 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| UC509_RS10915 (uc509_2169) | ssb | 2159173..2159673 (-) | 501 | WP_011677241.1 | single-stranded DNA-binding protein | Machinery gene |
| UC509_RS10920 (uc509_2170) | rpsF | 2159703..2159996 (-) | 294 | WP_011677242.1 | 30S ribosomal protein S6 | - |
| UC509_RS10925 (uc509_2171) | - | 2160190..2161044 (-) | 855 | WP_015082960.1 | undecaprenyl-diphosphate phosphatase | - |
| UC509_RS10930 (uc509_2172) | - | 2161566..2163032 (+) | 1467 | WP_015082961.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18233.05 Da Isoelectric Point: 5.2166
>NTDB_id=54489 UC509_RS10915 WP_011677241.1 2159173..2159673(-) (ssb) [Lactococcus cremoris subsp. cremoris UC509.9]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=54489 UC509_RS10915 WP_011677241.1 2159173..2159673(-) (ssb) [Lactococcus cremoris subsp. cremoris UC509.9]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.62 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.584 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
33.898 |
100 |
0.361 |