Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   JZY07_RS02225 Genome accession   NZ_CP071305
Coordinates   424141..424806 (+) Length   221 a.a.
NCBI ID   WP_024382697.1    Uniprot ID   A0A0Z8HE24
Organism   Streptococcus suis strain SC183     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419141..429806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS02200 (JZY07_02200) - 419352..420752 (+) 1401 WP_024412391.1 Cof-type HAD-IIB family hydrolase -
  JZY07_RS02205 (JZY07_02205) - 420754..421125 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  JZY07_RS02210 (JZY07_02210) cysK 421151..422077 (-) 927 WP_206974775.1 cysteine synthase A -
  JZY07_RS02215 (JZY07_02215) - 422167..422799 (-) 633 WP_024400101.1 YigZ family protein -
  JZY07_RS02220 (JZY07_02220) comFA/cflA 422856..424148 (+) 1293 WP_024400100.1 DEAD/DEAH box helicase Machinery gene
  JZY07_RS02225 (JZY07_02225) comFC/cflB 424141..424806 (+) 666 WP_024382697.1 ComF family protein Machinery gene
  JZY07_RS02230 (JZY07_02230) raiA 424883..425425 (+) 543 WP_004194117.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25720.54 Da        Isoelectric Point: 8.4541

>NTDB_id=544851 JZY07_RS02225 WP_024382697.1 424141..424806(+) (comFC/cflB) [Streptococcus suis strain SC183]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLSATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=544851 JZY07_RS02225 WP_024382697.1 424141..424806(+) (comFC/cflB) [Streptococcus suis strain SC183]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCAACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAGTGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8HE24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484