Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   LO014_RS14710 Genome accession   NZ_CP087300
Coordinates   2954289..2954963 (-) Length   224 a.a.
NCBI ID   WP_000161506.1    Uniprot ID   G1CBK2
Organism   Acinetobacter baumannii strain OC061     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2949289..2959963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO014_RS14685 - 2949577..2950764 (+) 1188 WP_001181775.1 ammonium transporter -
  LO014_RS14690 - 2950917..2951615 (+) 699 WP_000184466.1 phosphatase PAP2 family protein -
  LO014_RS14695 - 2951616..2952572 (-) 957 Protein_2879 ATP-binding protein -
  LO014_RS14700 - 2952622..2953841 (+) 1220 WP_087486619.1 IS3-like element ISAba19 family transposase -
  LO014_RS14705 - 2953882..2954262 (-) 381 Protein_2881 two-component sensor histidine kinase -
  LO014_RS14710 ciaR 2954289..2954963 (-) 675 WP_000161506.1 DNA-binding response regulator PmrA Regulator
  LO014_RS14715 - 2954978..2956627 (-) 1650 WP_031944804.1 phosphoethanolamine transferase -
  LO014_RS14720 - 2956810..2958114 (-) 1305 WP_002059088.1 DcaP family trimeric outer membrane transporter -
  LO014_RS14725 - 2958660..2959907 (-) 1248 WP_002059085.1 MFS transporter -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25562.50 Da        Isoelectric Point: 5.3246

>NTDB_id=544730 LO014_RS14710 WP_000161506.1 2954289..2954963(-) (ciaR) [Acinetobacter baumannii strain OC061]
MTKILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKTKFDLILLDLGLPMMDGMQVLKQIRQRAATPVLIISA
RDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRTGVEAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREW
AILIPLMTHPNKIFSKANLEDKLYDFDSDVTSNTIEVYVHHLRAKLGKDFIRTIRGLGYRLGQS

Nucleotide


Download         Length: 675 bp        

>NTDB_id=544730 LO014_RS14710 WP_000161506.1 2954289..2954963(-) (ciaR) [Acinetobacter baumannii strain OC061]
ATGACAAAAATCTTGATGATTGAAGATGATTTTATGATTGCAGAATCAACGATCACATTGCTGCAATATCATCAATTTGA
GGTGGAATGGGTCAATAACGGTTTAGATGGTTTGGCTCAATTGGCGAAGACTAAATTTGATCTTATTCTTTTGGATTTAG
GATTGCCTATGATGGATGGTATGCAAGTTTTAAAGCAGATCCGTCAAAGAGCAGCAACACCAGTATTAATTATTTCTGCC
CGAGATCAATTACAAAACCGTGTCGATGGTTTAAATTTGGGTGCAGATGATTATTTAATTAAACCTTATGAGTTTGATGA
GTTGCTTGCCCGTATTCATGCATTACTACGCCGTACTGGAGTAGAAGCTCAACTTGCGAGTCAAGATCAACTATTAGAAA
GTGGTGATCTGGTTTTAAATGTTGAACAGCATATTGCGACGTTTAAAGGCCAACGCATTGATTTATCAAATCGTGAATGG
GCAATCTTAATTCCACTTATGACTCACCCAAATAAAATCTTTTCTAAAGCCAACTTAGAAGATAAGTTATATGATTTTGA
TAGTGATGTGACCAGTAATACTATTGAAGTATATGTTCACCATTTAAGAGCGAAGCTGGGTAAAGATTTTATCCGAACCA
TCCGAGGACTGGGCTACCGTTTGGGGCAATCATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-221)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1CBK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.053

100

0.384
  ciaR Streptococcus pneumoniae D39

38.053

100

0.384
  ciaR Streptococcus pneumoniae R6

38.053

100

0.384
  ciaR Streptococcus pneumoniae TIGR4

38.053

100

0.384
  ciaR Streptococcus mutans UA159

37.004

100

0.375
  micA Streptococcus pneumoniae Cp1015

35.526

100

0.362