Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   J0J34_RS02040 Genome accession   NZ_CP071290
Coordinates   420512..422722 (+) Length   736 a.a.
NCBI ID   WP_206886512.1    Uniprot ID   -
Organism   Lactococcus garvieae strain LG791     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415512..427722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J34_RS02025 (J0J34_02025) - 416887..418443 (+) 1557 WP_004259192.1 ABC-F family ATP-binding cassette domain-containing protein -
  J0J34_RS02030 (J0J34_02030) - 418609..419784 (+) 1176 WP_206886484.1 SLC13 family permease -
  J0J34_RS02035 (J0J34_02035) - 419842..420492 (+) 651 WP_206886504.1 helix-hairpin-helix domain-containing protein -
  J0J34_RS02040 (J0J34_02040) comEC 420512..422722 (+) 2211 WP_206886512.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J0J34_RS02045 (J0J34_02045) - 422877..423653 (+) 777 WP_014024338.1 alpha/beta hydrolase -
  J0J34_RS02050 (J0J34_02050) - 423849..424064 (+) 216 WP_003135074.1 F0F1 ATP synthase subunit C -
  J0J34_RS02055 (J0J34_02055) atpB 424119..424832 (+) 714 WP_004259176.1 F0F1 ATP synthase subunit A -
  J0J34_RS02060 (J0J34_02060) atpF 424846..425352 (+) 507 WP_004259173.1 F0F1 ATP synthase subunit B -
  J0J34_RS02065 (J0J34_02065) - 425367..425894 (+) 528 WP_014024339.1 F0F1 ATP synthase subunit delta -
  J0J34_RS02070 (J0J34_02070) atpA 425960..427468 (+) 1509 WP_004259170.1 F0F1 ATP synthase subunit alpha -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 85127.93 Da        Isoelectric Point: 9.6845

>NTDB_id=544623 J0J34_RS02040 WP_206886512.1 420512..422722(+) (comEC) [Lactococcus garvieae strain LG791]
MKQKFSLIYFVYLLVFVYFLIFSFSWPLLILSLFSFFIAFYRQYYSVLVLLLCFSLFLLMIKKETEVQVRKQPEKISKIT
PYMDTLQVNGSRLSFRGEVNGNDFQAFYTLTSEKEKEYFKKLAVKGTFYLEGTLEIPEEQRNFSGFDYRKYLRTQGVYRL
LKIEKIYGFEEKQDFDLRLVRRKAILWTQEHFPSPMSSYMTGLLFGWLDKDFEEMGELYTSLGIIHLFALSGMQVNFFIE
LLRNILLRLGLSQKLVFFIQIPFSIFYAFLTGLSLSILRALLQKNIPLKNSSDRFSVTFLLLMVFSPYFLLTTGGQLTML
YSFLITFFSGKFKELKGLKKSLLDSTVLAVGVLPLLIFHFHSFQPLSIILTLLFSLIFDFLLLPGLLFVFLLSLFGPALT
LFNPFFIVLESIVRWVGDLFDQPIVFGKPNLIFLLLLFMLSGLALDFYKKRNWNLSIIMVLFLLFFFVKNPKHPSITMVD
VGQGDSILLQDSWNSQNILIDTGGRLKIRADEQWKEGIYKSNAENTLLPYLRARGVSKIDVLIVTHPDEDHIGDLESVAQ
KVPIKNVYVSASALEKKSFAKKLSRLNSQIHIVKEGDKLPIFNSYLWFLTTGVEGKSDNDNSLVTFGEFYGKKFLFTGDL
EEEGEMQLQEEYPHLEVDVLKVGHHGSKTSSKETFLEAINPKLALISAGKNNRYKHPNQETLQQFAARGIKIYRTDQQGA
IRLLYKKGSWHIQTVK

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=544623 J0J34_RS02040 WP_206886512.1 420512..422722(+) (comEC) [Lactococcus garvieae strain LG791]
ATGAAACAAAAATTTTCGCTTATCTATTTCGTTTATCTCTTAGTCTTTGTTTATTTTCTTATTTTTAGTTTTTCATGGCC
TTTACTTATTCTTAGTCTCTTTAGTTTCTTCATCGCTTTTTATCGTCAATACTATAGTGTGTTAGTTCTTTTACTGTGCT
TTAGTTTATTCTTACTCATGATAAAAAAAGAAACGGAAGTACAAGTAAGAAAGCAACCAGAAAAAATTTCGAAAATTACC
CCTTATATGGATACACTTCAAGTAAATGGAAGCAGGCTCAGTTTCAGAGGAGAAGTGAACGGCAACGACTTCCAAGCTTT
TTACACCTTGACCTCGGAAAAAGAAAAAGAATACTTCAAAAAACTTGCGGTGAAGGGGACTTTTTACCTTGAAGGCACTT
TGGAGATTCCAGAAGAGCAAAGAAATTTTTCAGGTTTTGATTACAGGAAGTATTTAAGGACTCAAGGGGTCTATCGTCTT
CTTAAAATAGAAAAAATTTATGGATTTGAAGAAAAACAGGACTTTGATTTACGGCTGGTACGCCGAAAAGCCATTCTTTG
GACTCAGGAACATTTCCCTTCTCCTATGTCGTCCTATATGACAGGGCTTCTTTTTGGGTGGTTGGATAAAGACTTTGAAG
AAATGGGGGAGCTTTACACTAGCCTTGGTATTATCCATTTATTTGCGCTGTCAGGCATGCAGGTGAATTTTTTTATTGAA
CTTCTCCGAAATATTTTACTGCGGCTTGGCTTATCACAGAAGTTAGTCTTTTTTATCCAAATTCCCTTTTCGATATTTTA
TGCATTTCTTACAGGCTTATCTCTTTCAATCTTACGTGCGCTTCTTCAAAAAAATATCCCCCTTAAAAATTCAAGCGATA
GATTTTCTGTCACTTTTCTTCTTTTAATGGTGTTCAGTCCTTATTTCCTGCTGACAACAGGAGGACAACTCACGATGCTT
TATTCTTTCTTAATCACATTTTTTTCAGGAAAGTTCAAAGAACTAAAAGGATTAAAAAAATCGTTACTTGATTCTACTGT
CCTAGCTGTTGGGGTTCTTCCGCTTTTGATTTTTCACTTCCATAGTTTTCAGCCATTATCGATTATCTTGACTTTATTAT
TTAGTCTGATTTTTGATTTTTTACTTTTGCCAGGTTTACTTTTTGTTTTTCTTCTTTCTTTATTCGGTCCTGCTCTCACG
TTATTTAATCCTTTTTTTATTGTTTTAGAATCAATAGTAAGATGGGTGGGCGATTTATTTGACCAGCCGATTGTCTTTGG
CAAACCCAACCTTATTTTTTTACTTTTACTTTTTATGCTGAGTGGACTTGCCCTTGATTTTTATAAAAAAAGAAACTGGA
ACTTGAGCATAATAATGGTTCTTTTCTTGCTTTTTTTCTTTGTTAAGAATCCTAAACACCCAAGCATTACAATGGTAGAT
GTGGGACAAGGGGACAGTATTCTTTTACAAGACAGTTGGAACAGCCAAAACATCCTCATCGATACGGGCGGGAGATTAAA
AATAAGAGCTGATGAGCAGTGGAAGGAGGGAATCTATAAGAGCAATGCCGAAAATACACTTCTGCCTTATCTGAGAGCGC
GTGGCGTGAGTAAGATAGATGTTCTGATTGTGACACATCCAGATGAGGATCATATTGGAGACCTGGAGAGTGTGGCTCAG
AAAGTACCAATAAAAAATGTTTATGTGTCAGCTTCTGCATTGGAGAAGAAAAGCTTTGCTAAAAAACTCAGCCGTTTAAA
CAGTCAGATTCACATTGTGAAGGAGGGGGACAAGCTCCCCATCTTTAACAGTTATCTCTGGTTTTTAACGACAGGTGTTG
AAGGTAAAAGCGACAATGATAATTCTTTAGTGACATTTGGTGAATTTTATGGGAAGAAATTTCTTTTTACAGGCGACTTA
GAAGAAGAGGGAGAGATGCAACTCCAGGAAGAATATCCCCATTTAGAGGTGGATGTCCTAAAAGTTGGACATCATGGCAG
TAAAACTTCTTCAAAGGAAACTTTTTTAGAAGCCATCAACCCTAAGCTCGCTCTTATTTCGGCTGGAAAGAATAATCGAT
ATAAACATCCCAATCAAGAAACGCTCCAACAATTCGCTGCACGAGGCATAAAAATTTATCGTACAGACCAGCAAGGAGCA
ATCCGTCTCCTTTATAAAAAAGGCAGTTGGCACATTCAAACAGTAAAGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(203-445)

Metallo-beta-lactamase superfamily (Lactamase_B)

(481-689)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

53.206

99.592

0.53
  comEC/celB Streptococcus mitis SK321

44.712

100

0.454
  comEC/celB Streptococcus mitis NCTC 12261

43.834

100

0.444
  comEC/celB Streptococcus pneumoniae TIGR4

43.607

100

0.44
  comEC/celB Streptococcus pneumoniae Rx1

43.203

100

0.436
  comEC/celB Streptococcus pneumoniae D39

43.203

100

0.436
  comEC/celB Streptococcus pneumoniae R6

43.203

100

0.436