Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J0G23_RS16100 Genome accession   NZ_CP071263
Coordinates   3324333..3324869 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain MEI003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3319333..3329869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0G23_RS16080 (J0G23_15950) aphA 3319622..3320335 (+) 714 Protein_3147 acid phosphatase AphA -
  J0G23_RS16085 (J0G23_15955) yjbQ 3320446..3320862 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  J0G23_RS16090 (J0G23_15960) yjbR 3320866..3321222 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  J0G23_RS16095 (J0G23_15965) uvrA 3321257..3324079 (-) 2823 WP_024229436.1 excinuclease ABC subunit UvrA -
  J0G23_RS16100 (J0G23_15970) ssb 3324333..3324869 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  J0G23_RS16105 (J0G23_15975) yjcB 3324968..3325249 (-) 282 WP_001295689.1 YjcB family protein -
  J0G23_RS16110 (J0G23_15980) pdeC 3325678..3327264 (+) 1587 WP_024229437.1 c-di-GMP phosphodiesterase PdeC -
  J0G23_RS16115 (J0G23_15985) soxS 3327267..3327590 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  J0G23_RS16120 (J0G23_15990) soxR 3327676..3328140 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=544432 J0G23_RS16100 WP_000168305.1 3324333..3324869(+) (ssb) [Escherichia coli strain MEI003]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=544432 J0G23_RS16100 WP_000168305.1 3324333..3324869(+) (ssb) [Escherichia coli strain MEI003]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGCCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489