Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LPB19_RS06440 Genome accession   NZ_CP071247
Coordinates   1411247..1411783 (+) Length   178 a.a.
NCBI ID   WP_206645252.1    Uniprot ID   -
Organism   Marinobacter salinisoli strain LPB0319     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1406247..1416783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB19_RS06430 (LPB19_06430) uvrA 1406828..1409650 (-) 2823 WP_206645250.1 excinuclease ABC subunit UvrA -
  LPB19_RS06435 (LPB19_06435) - 1409831..1411201 (+) 1371 WP_206645251.1 MFS transporter -
  LPB19_RS06440 (LPB19_06440) ssb 1411247..1411783 (+) 537 WP_206645252.1 single-stranded DNA-binding protein Machinery gene
  LPB19_RS06445 (LPB19_06445) - 1412038..1412973 (+) 936 WP_206645253.1 biogenesis protein MshI -
  LPB19_RS06450 (LPB19_06450) - 1412970..1413575 (+) 606 WP_228289229.1 PilN domain-containing protein -
  LPB19_RS06455 (LPB19_06455) - 1413575..1414261 (+) 687 WP_206645254.1 type II secretion system protein M -
  LPB19_RS06460 (LPB19_06460) - 1414263..1414610 (+) 348 WP_228289230.1 hypothetical protein -
  LPB19_RS06465 (LPB19_06465) mshL 1414607..1416334 (+) 1728 WP_228289231.1 pilus (MSHA type) biogenesis protein MshL -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19269.36 Da        Isoelectric Point: 4.9464

>NTDB_id=544253 LPB19_RS06440 WP_206645252.1 1411247..1411783(+) (ssb) [Marinobacter salinisoli strain LPB0319]
MARGVNKVILIGNLGQDPETRYTPNGNAVVNLNLATDESYKDRQTGQMVPKTEWHRIVMFGKIAEVAGQYLRKGSKVYIE
GKLQTRKWQDQSGQDRYTTEVVVDINGQMQMLDSRGEGGGMGQGAPAGRPQQANYNAPPASQQGAQQPAGGGYSQPGQPA
QGGSMPEPVDDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=544253 LPB19_RS06440 WP_206645252.1 1411247..1411783(+) (ssb) [Marinobacter salinisoli strain LPB0319]
ATGGCACGAGGTGTAAACAAAGTTATTCTCATTGGGAACCTTGGGCAGGATCCTGAAACCCGCTATACCCCGAATGGCAA
TGCCGTGGTGAACCTCAACCTGGCGACAGACGAGAGCTACAAGGATCGTCAGACCGGCCAGATGGTTCCCAAAACCGAAT
GGCACCGTATTGTCATGTTCGGCAAGATCGCTGAAGTGGCGGGTCAATACCTGCGCAAGGGCTCCAAGGTCTATATCGAA
GGCAAGCTGCAGACCCGTAAGTGGCAGGATCAGAGTGGCCAGGATCGTTACACCACGGAAGTGGTTGTCGACATCAACGG
CCAGATGCAGATGCTGGATAGCCGTGGTGAAGGTGGTGGCATGGGGCAGGGCGCGCCGGCAGGTCGTCCGCAGCAAGCCA
ACTACAACGCACCGCCGGCCAGCCAGCAGGGTGCGCAGCAACCGGCCGGCGGCGGCTACAGCCAGCCCGGTCAGCCAGCC
CAGGGTGGCAGCATGCCTGAGCCGGTCGATGATTTTGACGACGATATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.824

100

0.618
  ssb Glaesserella parasuis strain SC1401

56.593

100

0.579
  ssb Neisseria meningitidis MC58

47.541

100

0.489
  ssb Neisseria gonorrhoeae MS11

47.541

100

0.489