Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BN424_RS12350 Genome accession   NC_019425
Coordinates   2622284..2622760 (-) Length   158 a.a.
NCBI ID   WP_015077126.1    Uniprot ID   K8EJP0
Organism   Carnobacterium maltaromaticum LMA28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2617284..2627760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN424_RS12320 (BN424_2628) - 2618487..2619020 (-) 534 WP_016356569.1 hypothetical protein -
  BN424_RS12325 (BN424_2630) - 2619376..2619663 (+) 288 WP_016356570.1 hypothetical protein -
  BN424_RS12330 (BN424_2629) - 2619653..2619919 (-) 267 WP_015077122.1 hypothetical protein -
  BN424_RS12335 (BN424_2631) - 2620762..2621193 (-) 432 WP_015077123.1 ArpU family phage packaging/lysis transcriptional regulator -
  BN424_RS12340 - 2621205..2621414 (-) 210 WP_041555030.1 hypothetical protein -
  BN424_RS18295 (BN424_2632) - 2621504..2621668 (-) 165 WP_015077124.1 hypothetical protein -
  BN424_RS12345 (BN424_2633) - 2621670..2622266 (-) 597 WP_015077125.1 DUF1642 domain-containing protein -
  BN424_RS12350 (BN424_2634) ssb 2622284..2622760 (-) 477 WP_015077126.1 single-stranded DNA-binding protein Machinery gene
  BN424_RS12355 (BN424_2635) - 2622764..2623075 (-) 312 WP_015077127.1 hypothetical protein -
  BN424_RS18375 (BN424_2636) - 2623059..2623442 (-) 384 WP_015077128.1 hypothetical protein -
  BN424_RS12365 (BN424_2637) - 2623439..2623840 (-) 402 WP_015077129.1 YopX family protein -
  BN424_RS12370 - 2623845..2624087 (-) 243 WP_041555031.1 hypothetical protein -
  BN424_RS12375 (BN424_2638) - 2624099..2624860 (-) 762 WP_015077130.1 DNA-methyltransferase -
  BN424_RS12380 (BN424_2639) - 2624861..2625226 (-) 366 WP_015077131.1 RusA family crossover junction endodeoxyribonuclease -
  BN424_RS12385 (BN424_2640) - 2625216..2625407 (-) 192 WP_015077132.1 hypothetical protein -
  BN424_RS12390 (BN424_2641) - 2625408..2625899 (-) 492 WP_015077133.1 hypothetical protein -
  BN424_RS18190 (BN424_2642) - 2625889..2626062 (-) 174 WP_015077134.1 hypothetical protein -
  BN424_RS12395 (BN424_2643) - 2626232..2627071 (-) 840 WP_041555032.1 ATP-binding protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17641.34 Da        Isoelectric Point: 4.7306

>NTDB_id=54425 BN424_RS12350 WP_015077126.1 2622284..2622760(-) (ssb) [Carnobacterium maltaromaticum LMA28]
MINRAILTGRLTTDADLKYTSSGTAVSSFTLAVNRQFTNQSGEREADFINCVVWRKQAESLANFTRKGSLIGVEGRLQTR
SYDNQQGQRVYVTEVVVDSFSLLESKAANEERQQPQQTNRPANNQANKQQYQQDNLPGTDPFASSGQPIDISDDDMPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=54425 BN424_RS12350 WP_015077126.1 2622284..2622760(-) (ssb) [Carnobacterium maltaromaticum LMA28]
ATGATAAATAGAGCAATATTAACAGGGAGACTGACTACTGATGCAGATTTAAAATATACATCTAGCGGAACAGCAGTATC
TTCTTTCACGTTAGCAGTAAATAGACAGTTCACGAACCAAAGCGGAGAACGAGAAGCAGATTTTATCAACTGCGTAGTAT
GGAGAAAACAAGCAGAGTCGTTAGCTAACTTCACTCGAAAAGGTTCGTTAATTGGAGTAGAAGGCAGATTGCAGACAAGA
AGCTATGACAATCAACAAGGTCAGCGTGTTTATGTAACAGAAGTAGTCGTTGACAGCTTTTCTTTACTAGAGTCGAAGGC
AGCAAACGAGGAACGTCAGCAACCGCAACAAACGAACAGACCGGCAAACAACCAAGCTAACAAACAGCAGTATCAGCAAG
ATAACTTACCAGGTACTGATCCATTTGCTTCAAGCGGACAACCAATCGACATTTCAGATGATGATATGCCTTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.353

100

0.671
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

67.089

0.386
  ssbB/cilA Streptococcus mitis NCTC 12261

50.442

71.519

0.361

Multiple sequence alignment