Detailed information NTG0054334

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SCAZ3_RS05055
• Genome accession: NZ_AIDX01000001
• Coordinates: 1072726..1073724 (+)
• Length: 332 a.a.
• NCBI ID: WP_003046011.1
• Uniprot ID: -
• Organism: Streptococcus canis FSL Z3-227
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1067726..1078724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCAZ3_RS05035 (SCAZ3_00450)	purE	1068099..1068590 (+)	492	WP_003046002.1	5-(carboxyamino)imidazole ribonucleotide mutase	-
SCAZ3_RS05040 (SCAZ3_00455)	purK	1068577..1069647 (+)	1071	WP_003046003.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
SCAZ3_RS05045 (SCAZ3_00460)	purB	1070165..1071457 (+)	1293	WP_003046005.1	adenylosuccinate lyase	-
SCAZ3_RS05050 (SCAZ3_00465)	comR	1071594..1072505 (+)	912	WP_003046007.1	helix-turn-helix domain-containing protein	Regulator
SCAZ3_RS12085 (SCAZ3_00470)	comS	1072592..1072693 (+)	102	WP_201281440.1	quorum-sensing system DWW-type pheromone	Regulator
SCAZ3_RS05055 (SCAZ3_00475)	ruvB	1072726..1073724 (+)	999	WP_003046011.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SCAZ3_RS05060 (SCAZ3_00480)	-	1073865..1074308 (+)	444	WP_003046014.1	low molecular weight protein-tyrosine-phosphatase	-
SCAZ3_RS05065 (SCAZ3_00485)	-	1074325..1074726 (+)	402	WP_003046016.1	MORN repeat-containing protein	-
SCAZ3_RS05070 (SCAZ3_00490)	-	1074723..1076498 (+)	1776	WP_003046018.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37398.89 Da
• Isoelectric Point: 4.6446

>NTDB_id=54334 SCAZ3_RS05055 WP_003046011.1 1072726..1073724(+) (ruvB) [Streptococcus canis FSL Z3-227]
MARILDNDIMGDEELVERTLRPQYLREYIGQDKVKEQLTIFIKAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNV
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQEADLTEIVERTADIFEMEIIHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVIT
TQITDKALTMLDVDREGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVVTEK
AYHHLGYPYQSH

Nucleotide

• Length: 999 bp

>NTDB_id=54334 SCAZ3_RS05055 WP_003046011.1 1072726..1073724(+) (ruvB) [Streptococcus canis FSL Z3-227]
ATGGCTAGAATTTTAGATAATGATATAATGGGGGACGAGGAGCTTGTTGAGCGAACTCTTCGTCCACAGTACTTGCGTGA
GTACATCGGGCAAGATAAAGTTAAAGAACAGTTAACCATTTTTATTAAAGCAGCTAAGCTGCGTGATGAGTCTTTGGATC
ATGTCTTGCTGTTTGGTCCTCCAGGGTTAGGGAAAACGACTATGGCATTTGTGATTGCTAATGAATTAGGGGTTAATGTG
AAGCAAACCTCAGGTCCAGCGATTGAAAAGGCTGGAGACTTGGTGGCCATTTTGAATGATTTGGAACCGGGGGATGTCTT
ATTTATTGATGAAATTCATCGCATGCCGATGGCTGTTGAGGAAGTGCTGTATAGCGCTATGGAAGATTTTTATATTGACA
TTATGATTGGTGCTGGAGATACCAGTCGAAGTGTTCATTTGGATTTACCGCCCTTTACGTTGATTGGTGCGACAACGCGA
GCTGGGATGTTATCAAATCCTTTGCGAGCTCGTTTTGGTATTACTGGACACATGGAGTATTATCAGGAAGCTGATTTGAC
TGAAATTGTGGAACGGACAGCGGATATTTTTGAAATGGAAATTATCCACGAGGCGGCCCAAGAGCTAGCTTGTCGCAGTC
GAGGAACCCCACGTATTGCCAATCGATTATTAAAACGAGTGCGTGACTATGCTCAAATTGTTGGAGATGGAGTGATTACA
ACGCAAATCACGGATAAGGCTTTAACCATGTTGGATGTTGACCGAGAAGGGCTTGATTATGTGGACCAAAAGATTTTACG
AACCATGATTGAAATGTATCAGGGTGGTCCGGTTGGTTTAGGCACTTTATCAGTTAATATTGCAGAAGAACGTGATACGG
TTGAAGACATGTATGAACCCTATTTAATTCAAAAAGGGTTTCTAATGCGTACGCGCACTGGTCGTGTAGTAACTGAAAAA
GCCTATCATCATCTTGGCTACCCTTACCAAAGCCATTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.091	99.398	0.886
ruvB	Streptococcus pneumoniae R6	89.091	99.398	0.886
ruvB	Streptococcus pneumoniae D39	89.091	99.398	0.886
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.991	97.289	0.593
ruvB	Helicobacter pylori 26695	50	98.193	0.491
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47