Detailed information NTG0543215

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: JZI44_RS01480
• Genome accession: NZ_CP071148
• Coordinates: 275526..276560 (+)
• Length: 344 a.a.
• NCBI ID: WP_012678811.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi strain 470_001
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 270526..281560

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JZI44_RS01460 (JZI44_01460)	-	270919..271284 (+)	366	WP_012514777.1	DUF1033 family protein	-
JZI44_RS01465 (JZI44_01465)	-	271821..273824 (+)	2004	WP_012678808.1	DUF1430 domain-containing protein	-
JZI44_RS01470 (JZI44_01470)	-	273826..274473 (+)	648	WP_012678809.1	ATP-binding cassette domain-containing protein	-
JZI44_RS01475 (JZI44_01475)	comGA/cglA	274655..275593 (+)	939	WP_012678810.1	competence type IV pilus ATPase ComGA	Machinery gene
JZI44_RS01480 (JZI44_01480)	comYB	275526..276560 (+)	1035	WP_012678811.1	competence type IV pilus assembly protein ComGB	Machinery gene
JZI44_RS01485 (JZI44_01485)	comGC/cglC	276561..276884 (+)	324	WP_012514782.1	competence type IV pilus major pilin ComGC	Machinery gene
JZI44_RS01490 (JZI44_01490)	comGD	276862..277287 (+)	426	WP_012678812.1	competence type IV pilus minor pilin ComGD	-
JZI44_RS01495 (JZI44_01495)	comGE	277244..277534 (+)	291	WP_012678813.1	competence type IV pilus minor pilin ComGE	-
JZI44_RS01500 (JZI44_01500)	comYF	277521..277955 (+)	435	WP_012678814.1	competence type IV pilus minor pilin ComGF	Machinery gene
JZI44_RS01505 (JZI44_01505)	comGG	277933..278295 (+)	363	WP_012678815.1	competence type IV pilus minor pilin ComGG	-
JZI44_RS01510 (JZI44_01510)	-	278361..279703 (+)	1343	Protein_264	IS3 family transposase	-
JZI44_RS01515 (JZI44_01515)	comYH	279788..280741 (+)	954	WP_012678816.1	class I SAM-dependent methyltransferase	Machinery gene

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 39431.69 Da
• Isoelectric Point: 9.4359

>NTDB_id=543215 JZI44_RS01480 WP_012678811.1 275526..276560(+) (comYB) [Streptococcus equi subsp. equi strain 470_001]
MISFLRRDISIPGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNTLTDLLL
HLPHYFLGFCLLVLLLIGSFYLYAKSCSRLKLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQQMGDVF

Nucleotide

• Length: 1035 bp

>NTDB_id=543215 JZI44_RS01480 WP_012678811.1 275526..276560(+) (comYB) [Streptococcus equi subsp. equi strain 470_001]
TTGATCAGCTTCTTGCGGAGGGACATCTCAATACCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATTATACTTTTGGGTTTTC
TAGTGGTTATCATGCTAGGCTTGCGTCATTACCTAATCCCTCAGCTAGAGAGTCAAAATACCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGTTTTTGTTTGCTTGTGCTGTTGCTAATTGGCTCTTTTTACCTATATGCCAAGTCCTG
TAGTCGGCTAAAACTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTAAGCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCT
ATTCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACAGATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (215-335)

• Type II secretion system (T2SS), protein F (T2SSF) (29-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	53.982	98.547	0.532
comYB	Streptococcus mutans UA159	53.982	98.547	0.532
comYB	Streptococcus gordonii str. Challis substr. CH1	52.059	98.837	0.515
comGB/cglB	Streptococcus mitis NCTC 12261	48.81	97.674	0.477
comGB/cglB	Streptococcus mitis SK321	49.249	96.802	0.477
comGB/cglB	Streptococcus pneumoniae Rx1	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae D39	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae R6	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae TIGR4	48.649	96.802	0.471
comGB	Lactococcus lactis subsp. cremoris KW2	46.933	94.767	0.445